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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttaagctccttctctaactcctgctccggcaaaatctgcatatcagagcttcatctttgctatacttttccacagGACTTCTTGGAGAAAAACACCGAGGAATTTCAGCTGTATAAACGACATTCAGACAACTATATATGCTCTCTGATTCCAGGAACATCCAGCTTTCAGGCCC

Basic information

species Vitis vinifera
transcript Vv02s0025g02650.t01
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161720276|gb|FC070537.1|FC070537
EST:     CCTTCAGTTGGGACGACAAGCGAGCTGGAACAAAGGTCCTTCTTTCCAAG                         GACTTCTTGGAGAAAAACACCGAGGAATTTCAGCTGTATAAACGACATTCA
genomic: CCTTCAGTTGGGACGACAAGCGAGCTGGAACAAAGGTCCTTCTTTCCAAGgttaagctcc ... ttttccacagGACTTCTTGGAGAAAAACACCGAGGAATTTCAGCTGTATAAACGACATTCA
EST: gi|110733016|gb|EE108808.1|EE108808
EST:     CCTTCAGTTGGGACGACAAGCGAGCTGGAACAAAGGTCCTTCTTTCCAAG                         GACTTCTTGGAGAAAAACACCGAGGAATTTCAGCTGTATAAACGACATTCA
genomic: CCTTCAGTTGGGACGACAAGCGAGCTGGAACAAAGGTCCTTCTTTCCAAGgttaagctcc ... ttttccacagGACTTCTTGGAGAAAAACACCGAGGAATTTCAGCTGTATAAACGACATTCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgctccggcaaaatctgcatatcagagcttcatctttgctatacttttccacagGACTTCTTGGAGAAAAACACCGAGGAATTTCAGCTGTATAAACGACATTCAGACAACTATATATGCTCTCTGATTCCAGGAACATCCAGCTTTCAGGCCC
                                          tacttttcc  CT-rich tract
                                        tatactttt  TA-rich tract