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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatcatttccattctctatcaatgaccgatagatggttgtgcatcgagtgttgatgaatggtagacatttgatatgatatttgttccatgcagATATTCTTCTCTTGGATGTGGCTCCGCTCACTCTTGGAATTGAAACCGTTGGTGGGGTGATGACCAAGTTGATTCCTAGGAACACTGTTATCCCGACCAA

Basic information

species Vitis vinifera
transcript Vv02s0025g02140.t01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0025g02140.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: LOC_Os02g02410.1 (Oryza sativa), 3'ss of exon 5
gtatcatttccattctctatcaatgaccgatagatggttgtgcatcgagtgttgatgaatggtagacatttgatatgatat--ttgttccatgcagATATTCTTCTCTTGGATGTGGCTCCGCTCACTCTTGGAATTGAAACCGTTGGTGGGGTGATGACCAAGTTGATTCCTAGGAACACTGTTATCCCGACCAA
||   |  |  ||    || ||  | ||  | | | | |    |  | |      ||  | | | | | ||    || | |  || |   | |||||||| |||||| |||||||||| || || || || || || || || || ||||| || |||||||||||||| || |||||||| || ||||| |||||
gttcgaccttgatcacata-catagtcctttgggttggtaacaactgcgatcatctgtcttgcatatacttatcgtgctttgattttggtacgcagATATCCTTCTCCTGGATGTGGCACCCCTTACCCTCGGTATCGAGACTGTCGGTGGAGTCATGACCAAGTTGATCCCCAGGAACACCGTCATCCCCACCAA

upper sequence: Vv02s0025g02140.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GRMZM2G415007_T01 (Zea mays), 3'ss of exon 5
gtatcatttccattctctatcaatgaccgatagatggttgtgcatcgagtgttgatgaatggtagacatttga-tatgatatttgttccatgcagATATTCTTCTCTTGGATGTGGCTCCGCTCACTCTTGGAATTGAAACCGTTGGTGGGGTGATGACCAAGTTGATTCCTAGGAACACTGTTATCCCGACCAA
||    |   | ||| |||    | |  | | | || || |   ||  ||        ||  |    |  | | | |||| ||   |  |||||||||| || ||| | ||||||||||| ||||| || || ||||| ||||| ||||| || |||||||||||||| || ||||||||||| |||||||||||
gttcggtgctctttcactagtgct-atagctgggtgtttttttttcttgtaagtggtcatcctgcttacataagtgtgattttgccttgatgcagATATCCTCCTCCTTGATGTGGCTCCTCTCACCCTGGGTATTGAGACCGTCGGTGGAGTCATGACCAAGTTGATCCCGAGGAACACTGTCATCCCGACCAA

upper sequence: Vv02s0025g02140.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GRMZM2G114793_T01 (Zea mays), 3'ss of exon 5
-------gtatcatttccattctctatcaatgaccgatagatggttgtgc-atcgagtgttgatgaatggtagacatttgatatgatatttgttcc-atgcagATATTCTTCTCTTGGATGTGGCTCCGCTCACTCTTGGAATTGAAACCGTTGGTGGGGTGATGACCAAGTTGATTCCTAGGAACACTGTTATCCCGACCAA
         ||  |||   | |||| |     || | ||| || || |       |||| | ||      || | |     | |||| ||||     |||||||||| || ||| | ||||||||||| ||||| || || || || ||||| ||||| || |||||||||||||| || ||||||||||| |||||||||||
gttcggctcatgttttttgtgctcttttgcc-actggtaggtgttttttttggtaagtgatcattctgcttacata---agtgtgatttttgccttgatgcagATATCCTCCTCCTTGATGTGGCTCCCCTCACCCTGGGTATCGAGACCGTCGGTGGAGTCATGACCAAGTTGATCCCGAGGAACACTGTCATCCCGACCAA

upper sequence: Vv02s0025g02140.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA05G36600.1 (Glycine max), 3'ss of exon 5
---------------gtatcatttc-cattctctatcaatgaccgatagatggttgtgcat-cgagtg--ttgatgaatggtagacatt-----tgatatgatatttgttccatgcagATATTCTTCTCTTGGATGTGGCTCCGCTCACTCTTGGAATTGAAACCGTTGGTGGGGTGATGACCAAGTTGATTCCTAGGAACACTGTTATCCCGACCAA
                | | | ||| ||||   | || |  |    || ||  || |  || | |||   |||        || || ||     || | ||    |   |  || ||||||| |||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||| ||||||||||| || |||||||||||||| |||||
gtactacagtctgtaatctaacttctcattacttgtccagaaatcctaaata-ttatttatgcaagtagattgccacgcattacactttctcattgttgtgtggctctctggatccagATATCCTTCTCTTGGATGTGGCTCCCCTCACCCTTGGAATTGAAACTGTTGGTGGGGTGATGACGAAGTTGATTCCCAGAAACACTGTTATCCCTACCAA

upper sequence: Vv02s0025g02140.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA08G02960.1 (Glycine max), 3'ss of exon 5
-----------------gtatcatttccattctctatcaatgaccgatagatgg---ttgtgcat-cgagtgttgatgaat---ggtagacatttgatatgatatttgttccatgcagATATTCTTCTCTTGGATGTGGCTCCGCTCACTCTTGGAATTGAAACCGTTGGTGGGGTGATGACCAAGTTGATTCCTAGGAACACTGTTATCCCGACCAA
                  || | | || |||   | || |  |   ||| ||     || ||||      |  |||   ||   | |      ||| | ||    |   |  || ||||||| |||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||| ||||||||||| || |||||||||||||| |||||
gtactgtagtctgtaatctaacttctcaattacttgtccagaaatcataaatattatttatgcaagtagattgtgacacattacgctgtctcattgttgtgtggctctctggatccagATATCCTTCTCTTGGATGTGGCTCCCCTCACCCTTGGAATTGAAACTGTTGGTGGGGTGATGACGAAGTTGATTCCCAGAAACACTGTTATCCCTACCAA

upper sequence: Vv02s0025g02140.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA08G02940.1 (Glycine max), 3'ss of exon 5
gtatcatttccattctctatcaatgaccgatagatggttgtgcatcgagtgttgatgaatggtagacatttgatatgatatttgttccatgcagATATTCTTCTCTTGGATGTGGCTCCGCTCACTCTTGGAATTGAAACCGTTGGTGGGGTGATGACCAAGTTGATTCCTAGGAACACTGTTATCCCGACCAA
       | ||||  ||| | |||     ||  ||||  ||  || |        |  |   |  |  | |  | ||  | |   || || ||||||| |||||| ||||||||||||| |||||||| ||||||||||| |||||||| || ||||| ||||||||||| || ||||||||||||||||||||
------gtaccatagtctgtaaatatt--atttatggaagtagattgctaagcattacactttctaattgttgtgtggcaatc--tctatccagATATCCTTCTCCTGGATGTGGCTCCCCTCACTCTCGGAATTGAAACTGTTGGTGGAGTCATGACAAAGTTGATTCCCAGAAACACTGTTATCCCGACCAA

upper sequence: Vv02s0025g02140.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA05G36620.1 (Glycine max), 3'ss of exon 5
-----------------gtatcatttccattctctatcaatgaccgatagatgg---ttgtgcatcgagtgttgatgaatggtagacatttgatatgatatttgt-----tccatgcagATATTCTTCTCTTGGATGTGGCTCCGCTCACTCTTGGAATTGAAACCGTTGGTGGGGTGATGACCAAGTTGATTCCTAGGAACACTGTTATCCCGACCAA
                 ||| | |||  |||   | ||    |   ||| ||     ||  |||   ||  ||| | |     | || ||  |   | | | ||      || || |||| || |||||| ||||||||||||| |||||||| ||||||||||| |||||||| || ||||| ||||||||||| || |||||||||||||| |||||
gtaccgtagtctgtaatgtagcttttaaattacttgtcccgaagtcataaatattatttacgcaattag-attgctaagcataacactttctaatcgttgtgtggcaatatctatccagACATCCTTCTCCTGGATGTGGCTCCCCTCACTCTCGGAATTGAAACTGTTGGTGGAGTCATGACAAAGTTGATTCCCAGAAACACTGTTATCCCAACCAA

upper sequence: Vv02s0025g02140.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: EFJ29073 (Selaginella moellendorffii), 3'ss of exon 5
gtatcatttccattctctatcaatgaccgatagatggttgtgcatcgagtgttgatgaatggtagac-atttgatatgatatttgttccatg-cagATATTCTTCTCTTGGATGTGGCTCCGCTCACTCTTGGAATTGAAACCGTTGGTGGGGTGATGACCAAGTTGATTCCTAGGAACACTGTTATCCCGACCAA
                                      |  |||  || |  |  |   | |||  | || ||   | |     || |   | |||  |||||||||||||| || || || || ||||| || || || ||||||||||| |||||||||||| |||| || ||||||||||| || ||||||||
-------------------------------------gtaagcaaagacttgtcttcttttgtaatccatctgtgctaacgcgcgtccatcgacagGCATTCTTCTCTTGGACGTTGCGCCCCTTACTCTGGGTATCGAGACCGTTGGTGGAGTGATGACCAAGCTGATCCCCAGGAACACTGTCATTCCGACCAA

upper sequence: Vv02s0025g02140.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: EFJ17607 (Selaginella moellendorffii), 3'ss of exon 5
gtatcatttccattctctatcaatgaccgatagatggttgtgcatcgagtgttgatgaatggtagacatttgatatgatatttgttccatg-cagATATTCTTCTCTTGGATGTGGCTCCGCTCACTCTTGGAATTGAAACCGTTGGTGGGGTGATGACCAAGTTGATTCCTAGGAACACTGTTATCCCGACCAA
                              ||      |     ||   | ||| | | |      ||| ||   | |     || |  || |||  |||||||||||||| || || || || ||||| || || || ||||||||||| |||||||||||| |||| || |||||||| || || ||||||||
-----------------------------gtaagcaaatacttgtcttcttttg-taatt------catctgtgctaacgcgcgtccattgacagGCATTCTTCTCTTGGACGTTGCGCCCCTTACTCTGGGTATCGAGACCGTTGGTGGAGTGATGACCAAGCTGATCCCCAGGAACACGGTCATTCCGACCAA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26262286|gb|CA813349.1|CA813349
EST:     TGCTGTACAAGGAAGCATTTTGAGTGGAGAGGGTGGTGATGAGACCAAAG                         ATATTCTTCTCTTGGATGTGGCTCCGCTCACTCTTGGAATTGAAATCGTTG
genomic: TGCTGTACAAGGAAGCATTTTGAGTGGAGAGGGTGGTGATGAGACCAAAGgtatcatttc ... ttccatgcagATATTCTTCTCTTGGATGTGGCTCCGCTCACTCTTGGAATTGAAACCGTTG
EST: gi|110708297|gb|EE085674.1|EE085674
EST:     TGCTGTACAAGGAAGCATTTTGAGTGGAGAGGGTGGTGATGAGACCAAAG                         ATATTCTTCTCTTGGATGTGGCTCCGCTCACTCTTGGAATTGAAACCGTTG
genomic: TGCTGTACAAGGAAGCATTTTGAGTGGAGAGGGTGGTGATGAGACCAAAGgtatcatttc ... ttccatgcagATATTCTTCTCTTGGATGTGGCTCCGCTCACTCTTGGAATTGAAACCGTTG
EST: gi|351048169|gb|FQ442139.1|FQ442139
EST:     TGCTGTACAAGGAAGCATTTTGAGTGGAGAGGGTGGTGATGAGACCAAAG                         ATATTCTTCTCTTGGATGTGGCTCCGCTCACTCTTGGAATTGAAACCGTTG
genomic: TGCTGTACAAGGAAGCATTTTGAGTGGAGAGGGTGGTGATGAGACCAAAGgtatcatttc ... ttccatgcagATATTCTTCTCTTGGATGTGGCTCCGCTCACTCTTGGAATTGAAACCGTTG
EST: gi|110379529|gb|EC944729.1|EC944729
EST:     TGCTGTACAAGGAAGCATTTTGAGTGGAGAGGGTGGTGATGAGACCAAAG                         ATATTCTTCTCTTGGATGTGGCTCCGCTCACTCTTGGAATTGAAACCGTTG
genomic: TGCTGTACAAGGAAGCATTTTGAGTGGAGAGGGTGGTGATGAGACCAAAGgtatcatttc ... ttccatgcagATATTCTTCTCTTGGATGTGGCTCCGCTCACTCTTGGAATTGAAACCGTTG
EST: gi|352799018|gb|FQ480867.1|FQ480867
EST:     TGCTGTACAAGGAAGCATTTTGAGTGGAGAGGGTGGTGATGAGACCAAAG                         ATATTCTTCTCTTGGATGTGGCTCCGCTCACTCTTGGAATTGAAACCGTTG
genomic: TGCTGTACAAGGAAGCATTTTGAGTGGAGAGGGTGGTGATGAGACCAAAGgtatcatttc ... ttccatgcagATATTCTTCTCTTGGATGTGGCTCCGCTCACTCTTGGAATTGAAACCGTTG
EST: gi|33404779|gb|CF210406.1|CF210406
EST:     TGCTGTACAAGGAAGCATTTTGAGTGGAGAGGGTGGTGATGAGACCAAAG                         ATATTCTTCTCTTGGATGTGGCTCCGCTCACTCTTGGAATTGAAACCGTTG
genomic: TGCTGTACAAGGAAGCATTTTGAGTGGAGAGGGTGGTGATGAGACCAAAGgtatcatttc ... ttccatgcagATATTCTTCTCTTGGATGTGGCTCCGCTCACTCTTGGAATTGAAACCGTTG
EST: gi|351026509|gb|FQ428521.1|FQ428521
EST:     TGCTGTACAAGGAAGCATTTTGAGTGGAGAGGGTGGTGATGAGACCAAAG                         ATATTCTTCTCTTGGATGTGGCTCCGCTCACTCTTGGAATTGAAACCGTTG
genomic: TGCTGTACAAGGAAGCATTTTGAGTGGAGAGGGTGGTGATGAGACCAAAGgtatcatttc ... ttccatgcagATATTCTTCTCTTGGATGTGGCTCCGCTCACTCTTGGAATTGAAACCGTTG
EST: gi|110690615|gb|EE067868.1|EE067868
EST:     TGCTGTACAAGGAAGCATTTTGAGTGGAGAGGGTGGTGATGAAACCAAAG                         ATATTCTTCTCTTGGATGTGGCTCCGCTCACTNCTTGGAATTGAA-CCGTT
genomic: TGCTGTACAAGGAAGCATTTTGAGTGGAGAGGGTGGTGATGAGACCAAAGgtatcatttc ... ttccatgcagATATTCTTCTCTTGGATGTGGCTCCGCTCACT-CTTGGAATTGAAACCGTT
EST: gi|30296634|gb|CB973428.1|CB973428
EST:     TGCTGTACAAGGAAGCATTTTGAGTGGAGAGGGANGTGATGAGACCAAAG                         ATATTCTTCTCTTGGATGTGGCTCCGCTCACTC
genomic: TGCTGTACAAGGAAGCATTTTGAGTGGAGAGGGTGGTGATGAGACCAAAGgtatcatttc ... ttccatgcagATATTCTTCTCTTGGATGTGGCTCCGCTCACTC
EST: gi|352794236|gb|FQ479478.1|FQ479478
EST:     TGCTGTACAAGGAAGCATTTTGAGTGGAGAGGGTGGTGATGAGACCAAAG                         ATATTCTTCTCTTGGATGTGGCTCCGCTCACTCTTGGAATTGAAACCGTTG
genomic: TGCTGTACAAGGAAGCATTTTGAGTGGAGAGGGTGGTGATGAGACCAAAGgtatcatttc ... ttccatgcagATATTCTTCTCTTGGATGTGGCTCCGCTCACTCTTGGAATTGAAACCGTTG
EST: gi|110700835|gb|EE077835.1|EE077835
EST:     TGCTGTACAAGGAAGCATTTTGAGTGGAGAGGGTGGTGATGAGACCAAAG                         ATATTCTTCTCTTGGATGTGGCTCCGCTTACTCTTGGAATTGAAACCGTTG
genomic: TGCTGTACAAGGAAGCATTTTGAGTGGAGAGGGTGGTGATGAGACCAAAGgtatcatttc ... ttccatgcagATATTCTTCTCTTGGATGTGGCTCCGCTCACTCTTGGAATTGAAACCGTTG
EST: gi|351033837|gb|FQ447875.1|FQ447875
EST:     TGCTGTACAAGGAAGCATTTTGAGTGGAGAGGGTGGTGATGAGACCAAAG                         ATATTCTTCTCTTGGATGTGGCTCCGCTCACTCTTGGAATTGAAACCGTTG
genomic: TGCTGTACAAGGAAGCATTTTGAGTGGAGAGGGTGGTGATGAGACCAAAGgtatcatttc ... ttccatgcagATATTCTTCTCTTGGATGTGGCTCCGCTCACTCTTGGAATTGAAACCGTTG
EST: gi|351044960|gb|FQ449214.1|FQ449214
EST:     TGCTGTACAAGGAAGCATTTTGAGTGGAGAGGGTGGTGATGAGACCAAAG                         ATATTCTTCTCTTGGATGTGGCTCCGCTCACTCTTGGAATTGAAACCGTTG
genomic: TGCTGTACAAGGAAGCATTTTGAGTGGAGAGGGTGGTGATGAGACCAAAGgtatcatttc ... ttccatgcagATATTCTTCTCTTGGATGTGGCTCCGCTCACTCTTGGAATTGAAACCGTTG
EST: gi|110719342|gb|EE097207.1|EE097207
EST:     GGAGAGGGTGGTGATGAGACCAAAG                         ATATTCTTCTCTTGGATGTGGCTCCGCTCACTCTTGGAATTGAAACCGTTG
genomic: GGAGAGGGTGGTGATGAGACCAAAGgtatcatttc ... ttccatgcagATATTCTTCTCTTGGATGTGGCTCCGCTCACTCTTGGAATTGAAACCGTTG
EST: gi|110702839|gb|EE079171.1|EE079171
EST:     AAGCATTTTGAGTGGAGAGGGTGGTGATGAGACCAAAG                         ATATTCTTCTCTTGGATGTGGCTCCGCTCACTCTTGGAATTGAAACCGTTG
genomic: AAGCATTTTGAGTGGAGAGGGTGGTGATGAGACCAAAGgtatcatttc ... ttccatgcagATATTCTTCTCTTGGATGTGGCTCCGCTCACTCTTGGAATTGAAACCGTTG
EST: gi|28968374|gb|CB347407.1|CB347407
EST:     TGCTGTACAAGGAAGCATTTTGAGTGGAGAGGGTGGTGATGAGACCAAAG                         ATATTCTTCTCTTGGATGTGGCTCCGCTCACTCTTGGAATTGAAACCGTTG
genomic: TGCTGTACAAGGAAGCATTTTGAGTGGAGAGGGTGGTGATGAGACCAAAGgtatcatttc ... ttccatgcagATATTCTTCTCTTGGATGTGGCTCCGCTCACTCTTGGAATTGAAACCGTTG
EST: gi|349825531|gb|FQ419448.1|FQ419448
EST:     TGCTGTACAAGGAAGCATTTTGAGTGGAGAGGGTGGTGATGAGACCAAAG                         ATATTCTTCTCTTGGATGTGGCTCCGCTCACTCTTGGAATTGAAACCGTTG
genomic: TGCTGTACAAGGAAGCATTTTGAGTGGAGAGGGTGGTGATGAGACCAAAGgtatcatttc ... ttccatgcagATATTCTTCTCTTGGATGTGGCTCCGCTCACTCTTGGAATTGAAACCGTTG
EST: gi|352790752|gb|FQ478300.1|FQ478300
EST:     TGCTGTACAAGGAAGCATTTTGAGTGGAGAGGGTGGTGATGAGACCAAAG                         ATATTCTTCTCTTGGATGTGGCTCCGCTCACTCTTGGAATTGAAACCGTTG
genomic: TGCTGTACAAGGAAGCATTTTGAGTGGAGAGGGTGGTGATGAGACCAAAGgtatcatttc ... ttccatgcagATATTCTTCTCTTGGATGTGGCTCCGCTCACTCTTGGAATTGAAACCGTTG
EST: gi|351055860|gb|FQ452325.1|FQ452325
EST:     TGCTGTACAAGGAAGCATTTTGAGTGGAGAGGGTGGTGATGAGACCAAAG                         ATATTCTTCTCTTGGATGTGGCTCCGCTCACTCTTGGAATTGAAACCGTTG
genomic: TGCTGTACAAGGAAGCATTTTGAGTGGAGAGGGTGGTGATGAGACCAAAGgtatcatttc ... ttccatgcagATATTCTTCTCTTGGATGTGGCTCCGCTCACTCTTGGAATTGAAACCGTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgcatcgagtgttgatgaatggtagacatttgatatgatatttgttccatgcagATATTCTTCTCTTGGATGTGGCTCCGCTCACTCTTGGAATTGAAACCGTTGGTGGGGTGATGACCAAGTTGATTCCTAGGAACACTGTTATCCCGACCAA
                                         tttgttcc  CT-rich tract
                            atttgatatgatattt  TA-rich tract