Sequence
atgc intronic sequence ATGC exonic sequencegcaagagaactaaatcccatacatatgcttgcatgaaataaatgaagttctgcaatacgatttctccatatgcaatgactatagacctttgggaatatgacagagatttcttgacatatgattagcttaaaatctaagatgagaacctgtgaatcttatcatgtaataactggaattgtttgctcttattctttcagTCAATGATTGGACATGGGCTTGGGGCTGCCGGTGGATTGGAAGCCATAGCAACCATAAAAGCAATCACCACTGGATGGATACATCCAACCATTAACCAAT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv02s0025g01730.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA05G36690.1 (Glycine max), 3'ss of exon 5
gcaagagaactaaatcccatacatatgcttgcatgaaataaatgaagttctgcaatacgatttctccatatgcaatgactatagacctttgggaatatgacagagatttcttgacatatgattagcttaaaatctaagatgagaacctgtgaatcttatcatgtaataactggaattgtttgctcttattctttcagTCAATGATTGGACATGGGCTTGGGGCTGCCGGTGGATTGGAAGCCATAGCAACCATAAAAGCAATCACCACTGGATGGATACATCCAACCATTAACCAAT
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----------------------------------------------------------------------------------------------gtaagaaacattttttttagttt-taaatacttcagaatcttaacagcgttcttctg---tcaaccttgaagttatc---attatattttcttatcgtttcagTCAATGATTGGTCATGGTCTTGGGGCTGCTGGTGGTTTGGAAGCCATAGCAACAATCAAAGCCATAACAACTGGCTGGTTGCATCCAACCATTAACCAAG
upper sequence: Vv02s0025g01730.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA08G02850.2 (Glycine max), 3'ss of exon 5
gcaagagaactaaatcccatacatatgcttgcatgaaataaatgaagttctgcaatacgatttctccatatgcaatgactatagacctttgggaatatgacagagatttcttgacatatgattagcttaaaatctaagatgagaacctgtgaatcttatcatgtaataactggaattgtttgctcttattctttcagTCAATGATTGGACATGGGCTTGGGGCTGCCGGTGGATTGGAAGCCATAGCAACCATAAAAGCAATCACCACTGGATGGATACATCCAACCATTAACCAAT
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---------------------------------------------------------------------------------------gtaagaaacattttt----tttttttagttttaaatgcttcagaatcttat-caacattctttca--ttaaccttgaagt--ttatcattatattttcttatcgtttcagTCAATGATTGGTCATGGTCTTGGGGCTGCTGGTGGTTTGGAAGCCATAGCAACTATCAAAGCCATAACAACTGGCTGGTTGCATCCAAGCATTAACCTAG
upper sequence: Vv02s0025g01730.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA18G10220.1 (Glycine max), 3'ss of exon 4
gcaagagaactaaatcccatacatatgcttgcatgaaataaatgaagttctgcaatacgatttctccatatgcaatgactatagacctttgggaatatgacagagatttcttgacatatgattagcttaaaatctaagatgagaacctgtgaatcttatcatgtaataactggaattgtttgctcttattctttcagTCAATGATTGGACATGGGCTTGGGGCTGCCGGTGGATTGGAAGCCATAGCAACCATAAAAGCAATCACCACTGGATGGATACATCCAACCATTAACCAAT
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----------------------------------------------------------------------------------------------gtaagaaacatttttttttagttttaaatgcttcataatcttat-cgacattctttca--ttaaccttgaagt--ttatcattatattttcttatcgtttcagTCAATGATTGGTCATGGTCTTGGGGCTGCTGGTGGTTTGGAAGCCATAGCAACTATCAAAGCCATAACAACTGGCTGGTTGCATCCAAGCATTAAC---- atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gaacctgtgaatcttatcatgtaataactggaattgtttgctcttattctttcagTCAATGATTGGACATGGGCTTGGGGCTGCCGGTGGATTGGAAGCCATAGCAACCATAAAAGCAATCACCACTGGATGGATACATCCAACCATTAACCAAT
taataac putative branch site (score: 1)
tttgctcttattcttt putative PPT
ttatcatgtaataa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gcaagagaactaaatcccatacatatgcttgcatgaaataaatgaagttctgcaatacgatttctccatatgcaatgactatagacctttgggaatatgacagagatttcttgacatatgattagcttaaaatctaagatgagaacctgtgaatcttatcatgtaataactggaattgtttgctcttattctttcagTCAATGATTGGACATGGGCTTGGGGCTGCCGGTGGATTGGAAGCCATAGCAACCATAAAAGCAATCACCACTGGATGGATACATCCAACCATTAACCAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA