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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtcaagctgaaaaactacttattttcctcttagaagtgttcctttcccttttcctattctgaactcaaagacacaattgaatttatatatggattgtttaactttgaatctttaatgataaacttcctacatcacctgccaatagGAGTGGAGCACTTGCTAAGGGATGTGAAGGATACAACCATTAGCACTCTTGCAACTGAG

Basic information

species Vitis vinifera
transcript Vv02s0025g01490.t01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0025g01490.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: PP1S197_115V6.1 (Physcomitrella patens), 3'ss of exon 5
gtatgtcaagctgaaaaactacttattttcctcttagaagtgttcctttcccttttcctattctgaactcaaagacacaattgaatttatatatggattgttta-actttgaatctttaat-gataaacttcctacatcacct-gccaatagGAGTGGAGCACTTGCTAAGGGATGTGAAGGATACAACCATTAGCACTCTTGCAACTGAG
                                                     ||   ||  |||   |   ||  |   ||| |  | |       |  | ||  |||  || |||||   ||| |||    |  ||    | |     ||| ||||| || ||| ||||||||||||||||| | ||||| ||||||||||| || |||
----------------------------------------------------cttctgtaacctgcgttttgagggaagcttgcacatgtcgtcaagtaatctacgcttataacctttatcagattaacaaatttgatattttcgtgtgcagGTGTGGAACATTTGTTAAGGGATGTGAAGGATGCGACCATCAGCACTCTTGCTACCGAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggattgtttaactttgaatctttaatgataaacttcctacatcacctgccaatagGAGTGGAGCACTTGCTAAGGGATGTGAAGGATACAACCATTAGCACTCTTGCAACTGAG
                aatctttaatgataaa  TA-rich tract