Sequence
atgc intronic sequence ATGC exonic sequence...cttcccctcaacctctcttcccaaactacccttcatgttttatcatatctactgaattacccttcagtcactaacacatgttctaaaatcttattttcagCTGTTCGAGTTTGGAGACAAATACAGGGGCAAATATGACAGCAGCATCACAGTGGCCCAGAAGTACTACCGGTCTTACAGTGGATACGCT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv02s0025g01380.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA08G02610.1 (Glycine max), 3'ss of exon 3
------cttcccctcaacctctcttcccaaactacccttcatgttttatcatatctactgaattacccttcagtcactaacacatgttctaaaatcttattttcagCTGTTCGAGTTTGGAGACAAATACAGGGGCAAATATGACAGCAGCATCACAGTGGCCCAGAAGTACTACCGGTCTTACAGTGGATACGCT
|| || | | | | || | | || | | | | || | | | | | | || | ||| | | | |||||||| || || |||| ||||||||||| ||||||||||||||||||||||| || ||||| ||||| ||| | || |||||| ||| |
gattcatttattgagaataatggtactcgattgactttactccattctttttctacccggacctgctcaactgactctctctggggttgt------tcaatttcagCTATTTGATTTTGCTGACAAATACAGAGGCAAATATGACAGCAGCATCACGGTTGCCCAAAAGTATTACAGATCCATCAGTGGTTACAAT
upper sequence: Vv02s0025g01380.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA05G36930.1 (Glycine max), 3'ss of exon 3
cttcccctcaacctctcttcccaaactacccttcatgttttatcata-tctactgaattacccttcagtc---actaacacatgttctaaaatcttatt----ttcagCTGTTCGAGTTTGGAGACAAATACAGGGGCAAATATGACAGCAGCATCACAGTGGCCCAGAAGTACTACCGGTCTTACAGTGGATACGCT
| | | | || || | | | || | || || | | || || | | | | ||| | ||| || || ||||||| || || |||| ||||||||||| |||||||||||||||||||| || || |||||||| || ||| | || |||||| ||| |
--------gattcatttattgagaattatggtactcgattgactttactccattccttttccatccggacttgttcaacttactctctctgggtttgttcaatttcagCTATTTGATTTTGCTGACAAATACAGAGGCAAATATGACAGCAGCATTACGGTTGCCCAGAAATATTACAGATCCATCAGTGGTTACAAT
upper sequence: Vv02s0025g01380.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: AT4G11050.1 (Arabidopsis thaliana), 3'ss of exon 3
--------cttcccctcaacctctcttcccaaactacccttcatgttttatcatatctactgaattacccttcagtcactaacacatgttctaaaatcttattttcagCTGTTCGAGTTTGGAGACAAATACAGGGGCAAATATGACAGCAGCATCACAGTGGCCCAGAAGTACTACCGGTCTTACAGTGGATACGCT
| ||| | | || || ||||| | || |||| ||| ||| || | | |||| || | || |||| ||||| || || |||| ||||||||||| |||||||||||||||||||| || ||||| || || || ||||| || ||| || ||| |
ttttggctaggtgcaaaaacgtagatagtagaaataaccttctcaactcataatatttac--gattgtgctactgatcctaatgcaattctta------tattgccagCTATTTGAATTTGCGGACAAATACAGAGGCAAATATGACAGCAGCATTACCGTGGCACAAAAATATTACCGATCCGTCAGCGGTTACAAT
upper sequence: Vv02s0025g01380.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: AT1G64390.1 (Arabidopsis thaliana), 3'ss of exon 3
-cttcccctcaacctctcttcccaaactacccttcatgttttatcatatctactgaattacccttcagtcactaacacatgttctaaaatcttattttcagCTGTTCGAGTTTGGAGACAAATACAGGGGCAAATATGACAGCAGCATCACAGTGGCCCAGAAGTACTACCGGTCTTACAGTGGATACGCT
| | | || | | || ||||| | || || | | | | ||| | | ||| | | | | || || ||| |||| || || | ||||||||||| || ||||| |||||||| ||||| || |||||||| |||||||| || ||| || ||| |
acgaaaacgccactccccacccaaaacttgtaaactaaccttgtctttaatgttttactacggatttgccaccctaattccattttttgt-ttggttacagTTGTTTGATTTCGCCGACAAATACAGAGGAAAATACGACAGCAGTATCACTGTTGCCCAGAAATACTACCGATCCGTCAGCGGTTACAATMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161717038|gb|FC065898.1|FC065898EST: GCCGTTCCAACCCTTCCTACGCCAATGAGCTTCTGACCCATGCTCGACAG CTGTTCGAGTTTGGAGACAAATACAGGGGCAAATATGACAGCAGCATCACA
genomic: GCCGTTCCAACCCTTCCTACGCCAATGAGCTTCTGACCCATGCTCGACAGgttcatctct ... ttattttcagCTGTTCGAGTTTGGAGACAAATACAGGGGCAAATATGACAGCAGCATCACA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tatctactgaattacccttcagtcactaacacatgttctaaaatcttattttcagCTGTTCGAGTTTGGAGACAAATACAGGGGCAAATATGACAGCAGCATCACAGTGGCCCAGAAGTACTACCGGTCTTACAGTGGATACGCT
tcttattttc CT-rich tract
ttctaaaatcttattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
cttcccctcaacctctcttcccaaactacccttcatgttttatcatatctactgaattacccttcagtcactaacacatgttctaaaatcttattttcagCTGTTCGAGTTTGGAGACAAATACAGGGGCAAATATGACAGCAGCATCACAGTGGCCCAGAAGTACTACCGGTCTTACAGTGGATACGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- tcccctc
- - - - - - - ctcttcc
- - - - - - - - - - -caaacta
- - - - - - - - - - - - - - cccttca
- - - - - - - - - - - - - - - - - - - - - - - - ctactga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cactaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catgttc