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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttagaataggttagatgaagaaactcagaagggcttttctctattttatgttatgtatttgttatttctcaatctttgctcattgttttctgcactccagAGTACTGTGAGAAGTATGCCAAGCCAGAAAACATTGGGGCTGCTCCAGAAGAGAAATCCAGTGATGAAGAGCTGAGCGAAGATAATTATGAATCCAGCGA

Basic information

species Vitis vinifera
transcript Vv02s0025g00070.t01
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|77588071|gb|DV223245.1|DV223245
EST:     TGCAGCCCTGATGATGCGAGATCGGCCTGCTTATGAACAAAGAGTGAAAG                         AGTACTGTGAGAAGTATGCCAAGCCAGAAAACATTGGGGCTGCTCCAGAAG
genomic: TGCAGCCCTGATGATGCGAGATCGGCCTGCTTATGAACAAAGAGTGAAAGgtagcagtcc ... tgcactccagAGTACTGTGAGAAGTATGCCAAGCCAGAAAACATTGGGGCTGCTCCAGAAG
EST: gi|349826284|gb|FQ416089.1|FQ416089
EST:     TGCAGCCCTGATGATGCGAGATCGGCCTGCTTATGAACAAAGAGTGAAAG                         GGTACTGTGAGAAGTATGCCAAGCCAGAAAACATTGGGGCTGCTCCAGAAG
genomic: TGCAGCCCTGATGATGCGAGATCGGCCTGCTTATGAACAAAGAGTGAAAGgtagcagtcc ... tgcactccagAGTACTGTGAGAAGTATGCCAAGCCAGAAAACATTGGGGCTGCTCCAGAAG
EST: gi|71875288|gb|DT024343.1|DT024343
EST:     TGCAGCCCTGATGATGCGAGATCGGCCTGCTTATGAACAAAGAGTGAAAG                         AGTACTGTGAGAAGTATGCCAAGCCAGAAAACATTGGGGCTGCTCCAGAAG
genomic: TGCAGCCCTGATGATGCGAGATCGGCCTGCTTATGAACAAAGAGTGAAAGgtagcagtcc ... tgcactccagAGTACTGTGAGAAGTATGCCAAGCCAGAAAACATTGGGGCTGCTCCAGAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttatgttatgtatttgttatttctcaatctttgctcattgttttctgcactccagAGTACTGTGAGAAGTATGCCAAGCCAGAAAACATTGGGGCTGCTCCAGAAGAGAAATCCAGTGATGAAGAGCTGAGCGAAGATAATTATGAATCCAGCGA
                                     ttgttttct  CT-rich tract
     ttatgtatttgttatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ttagaataggttagatgaagaaactcagaagggcttttctctattttatgttatgtatttgttatttctcaatctttgctcattgttttctgcactccagAGTACTGTGAGAAGTATGCCAAGCCAGAAAACATTGGGGCTGCTCCAGAAGAGAAATCCAGTGATGAAGAGCTGAGCGAAGATAATTATGAATCCAGCGA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - gaagaaa