1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gtatccacttgttaagtagtcatttacttgttttgggaaatgcaattcaagcttttgtattaaaccctgtagacattggttaaaacttggactgctgcagGTTCATCTTATTGAGGGCATCATTGATCAAGTTGAAGGGACAGTTCATGTGTCGTGGGTGCAGCCAAGAGTTTTGGGTATTCCACAGATCAAATCGTTGC
species | Vitis vinifera |
transcript | Vv02s0012g02660.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CCAAACTTTCTGTGGAGGATGTGGAGTATCTTCTTATGAAGAGCCTTTCT GTTCATCTTATTGAGGGCATCATTGATCAAGTTGAAGGGACAGTTCATGTGEST: gi|110702107|gb|EE080439.1|EE080439
genomic: CCAAACTTTCTGTGGAGGATGTGGAGTATCTTCTCATGAAGAGCCTTTCTgtaagtcctt ... actgctgcagGTTCATCTTATTGAGGGCATCATTGATCAAGTTGAAGGGACAGTTCATGTG
EST: CCAAACTTTCTGTGGAGGATGTGGAGTATCTTCTCATGAAGAGCCTTTCT GTTCATCTTATTGAGGGCATCATTGATCEST: gi|351019814|gb|FQ439631.1|FQ439631
genomic: CCAAACTTTCTGTGGAGGATGTGGAGTATCTTCTCATGAAGAGCCTTTCTgtaagtcctt ... actgctgcagGTTCATCTTATTGAGGGCATCATTGATC
EST: CCAAACTTTCTGTGGAGGATGTGGAGTATCTTCTCATGAAGAGCCTTTCT GTTCATCTTATTGAGGGCATCATTGATCAAGTTGAAGGGACAGTTCATGTGEST: gi|110694939|gb|EE072388.1|EE072388
genomic: CCAAACTTTCTGTGGAGGATGTGGAGTATCTTCTCATGAAGAGCCTTTCTgtaagtcctt ... actgctgcagGTTCATCTTATTGAGGGCATCATTGATCAAGTTGAAGGGACAGTTCATGTG
EST: CCAAACTTTCTGTGGAGGATGTGGAGTATCTTCTCATGAAGAGCCTTTCT GTTCATCTTATTGAGGGCATCATTGATCAAGTTGAAGGGACAGTTCATGTGEST: gi|110426954|gb|EC993383.1|EC993383
genomic: CCAAACTTTCTGTGGAGGATGTGGAGTATCTTCTCATGAAGAGCCTTTCTgtaagtcctt ... actgctgcagGTTCATCTTATTGAGGGCATCATTGATCAAGTTGAAGGGACAGTTCATGTG
EST: CATGAAGAGCCTTTCT GTTCATCTTATTGAGGGCATCATTGATCAAGTTGAAGGGACAGTTCATGTG
genomic: CATGAAGAGCCTTTCTgtaagtcctt ... actgctgcagGTTCATCTTATTGAGGGCATCATTGATCAAGTTGAAGGGACAGTTCATGTG
ttcaagcttttgtattaaaccctgtagacattggttaaaacttggactgctgcagGTTCATCTTATTGAGGGCATCATTGATCAAGTTGAAGGGACAGTTCATGTGTCGTGGGTGCAGCCAAGAGTTTTGGGTATTCCACAGATCAAATCGTTGC
ttttgtattaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatccacttgttaagtagtcatttacttgttttgggaaatgcaattcaagcttttgtattaaaccctgtagacattggttaaaacttggactgctgcagGTTCATCTTATTGAGGGCATCATTGATCAAGTTGAAGGGACAGTTCATGTGTCGTGGGTGCAGCCAAGAGTTTTGGGTATTCCACAGATCAAATCGTTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - ccacttg
- - - - - - - - - - catttac
- - - - - - - - - - - - - - - ttttggg
- - - - - - - - - - - - - - - - - - - aatgcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaccct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaactt