1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tgtagagaccttcagtgtggagtccaacataagattttaatagtcttttgactcatcctggtttcatgatcttttctttaatgttcctctcctctcttagGGTTCAACGGCCATATCAAGTGCTGATCTCTTTGGTCACAGTTCAGATAATTCCCCCCTTGATGTTTCTGCCAGTGACTTGATCAATCGGCTCTCTTTCC
species | Vitis vinifera |
transcript | Vv02s0012g01330.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ATTGAGGAAAGTGATGAAGCTAGGAGGAAGTTCTCAAATGCAAAATCTATCTCATCAGCCCAATATTTCGGGGATCCGAGTAAAGCCAATGACATGGACTCTCAAGTTTCCTEST: gi|71867134|gb|DT016189.1|DT016189
genomic: ATTGAGGAAAGTGATGAAGCTAGGAGGAAGTTCTCAAATGCAAAATCTATCTCATCAGCCCAATATTTCGGGGATCCGAGTAAAGCCAATGACATGGACTCTCAAGTTTCCT
EST: ATTGAGGAAAGTGATGAAGCTAGGAGGAAGTTCTCAAATGCAAAATCTATCTCATCAGCCCAATATTTCGGGGATCCGAGTAAAGCCAATGACATGGACTCTCAAGTTTCCTEST: gi|110405778|gb|EC971328.1|EC971328
genomic: ATTGAGGAAAGTGATGAAGCTAGGAGGAAGTTCTCAAATGCAAAATCTATCTCATCAGCCCAATATTTCGGGGATCCGAGTAAAGCCAATGACATGGACTCTCAAGTTTCCT
EST: ATTGAGGAAAGTGATGAAGCTAGGAGGAAGTTCTCAAATGCAAAATCTATCTCATCAGCCCAATATTTCGGGGATCCGAGTAAAGCCAATGACATGGACTCTCAAGTTTCCTEST: gi|33410214|gb|CF215841.1|CF215841
genomic: ATTGAGGAAAGTGATGAAGCTAGGAGGAAGTTCTCAAATGCAAAATCTATCTCATCAGCCCAATATTTCGGGGATCCGAGTAAAGCCAATGACATGGACTCTCAAGTTTCCT
EST: ATTGAGGAAAGTGATGAAGCTAGGAGGAAGTTCTCAAATGCAAAATCTATCTCATCAGCCCAATATTTCGGGGATCCGAGTAAAGCCAATGACATGGACTCTCAAGTTTCCTEST: gi|156736120|gb|EV240241.1|EV240241
genomic: ATTGAGGAAAGTGATGAAGCTAGGAGGAAGTTCTCAAATGCAAAATCTATCTCATCAGCCCAATATTTCGGGGATCCGAGTAAAGCCAATGACATGGACTCTCAAGTTTCCT
EST: ATTGAGGAAAGTGATGAAGCTAGGAGGAAGTTCTCAAATGCAAAATCTATCTCATCAGCCCAATATTTCGGGGATCCGAGTAAAGCCAATGACATGGACTCTCAAGTTTCCTEST: gi|110380236|gb|EC945484.1|EC945484
genomic: ATTGAGGAAAGTGATGAAGCTAGGAGGAAGTTCTCAAATGCAAAATCTATCTCATCAGCCCAATATTTCGGGGATCCGAGTAAAGCCAATGACATGGACTCTCAAGTTTCCT
EST: ATTGAGGAAAGTGATGAAGCTAGGAGGAAGTTCTCAAATGCAAAATCTATCTCATCAGCCCAATATTTCGGGGATCCGAGTAAAGCCAATGACATGGACTCTCAAGTTTCCTEST: gi|110400199|gb|EC966749.1|EC966749
genomic: ATTGAGGAAAGTGATGAAGCTAGGAGGAAGTTCTCAAATGCAAAATCTATCTCATCAGCCCAATATTTCGGGGATCCGAGTAAAGCCAATGACATGGACTCTCAAGTTTCCT
EST: ATTGAGGAAAGTGATGAAGCTAGGAGGAAGTTCTCAAATGCAAAATCTATCTCATCAGCCCAATATTTCGGGGATCCGAGTAAAGCCAATGACATGGACTCTCAAGTTTCCTEST: gi|110364414|gb|EC924108.1|EC924108
genomic: ATTGAGGAAAGTGATGAAGCTAGGAGGAAGTTCTCAAATGCAAAATCTATCTCATCAGCCCAATATTTCGGGGATCCGAGTAAAGCCAATGACATGGACTCTCAAGTTTCCT
EST: ATTGAGGAAAGTGATGAAGCTAGGAGGAAGTTCTCAAATGCAAAATCTATCTCATCAGCCCAATATTTCGGGGATCCGAGTAAAGCCAATGACATGGACTCTCAAGTTTCCTEST: gi|45771808|gb|CN007660.1|CN007660
genomic: ATTGAGGAAAGTGATGAAGCTAGGAGGAAGTTCTCAAATGCAAAATCTATCTCATCAGCCCAATATTTCGGGGATCCGAGTAAAGCCAATGACATGGACTCTCAAGTTTCCT
EST: ATTGAGGAAAGTGATGAAGCTAGGAGGAAGTTCTCAAATGCAAAATCTATCTCATCAGCCCAATATTTCGGGGATCCGAGTAAAGCCAATGACATGGACTCTCAAGTTTCCTEST: gi|22011758|gb|BQ796792.1|BQ796792
genomic: ATTGAGGAAAGTGATGAAGCTAGGAGGAAGTTCTCAAATGCAAAATCTATCTCATCAGCCCAATATTTCGGGGATCCGAGTAAAGCCAATGACATGGACTCTCAAGTTTCCT
EST: ATTGAGGAAAGTGATGAAGCTAGGAGGAAGTTCTCAAATGCAAAATCTATCTCATCAGCCCAATATTTCGGGGATCCGAGTAAAGCCAATGACATGGACTCTCAAGTTTCCTEST: gi|30126699|gb|CB912038.1|CB912038
genomic: ATTGAGGAAAGTGATGAAGCTAGGAGGAAGTTCTCAAATGCAAAATCTATCTCATCAGCCCAATATTTCGGGGATCCGAGTAAAGCCAATGACATGGACTCTCAAGTTTCCT
EST: ATTGAGGAAAGTGATGAAGCTAGGAGGAAGTTCTCAAATGCAAAATCTATCTCATCAGCCCAATATTTCGGGGATCCGAGTAAAGCCAATGACATGGACTCTCAAGTTTCCTEST: gi|110702022|gb|EE080258.1|EE080258
genomic: ATTGAGGAAAGTGATGAAGCTAGGAGGAAGTTCTCAAATGCAAAATCTATCTCATCAGCCCAATATTTCGGGGATCCGAGTAAAGCCAATGACATGGACTCTCAAGTTTCCT
EST: ATTGAGGAAAGTGATGAAGCTAGGAGGAAGTTCTCAAATGCAAAATCTATCTCATCAGCCCAATATTTCGGGGATCCGAGTAAAGCCAATGACATGGACTCTCAAGTTTCCTEST: gi|30128914|gb|CB914253.1|CB914253
genomic: ATTGAGGAAAGTGATGAAGCTAGGAGGAAGTTCTCAAATGCAAAATCTATCTCATCAGCCCAATATTTCGGGGATCCGAGTAAAGCCAATGACATGGACTCTCAAGTTTCCT
EST: ATTGAGGAAAGTGATGAAGCTAGGAGGAAGTTCTCAAATGCAAAATCTATCTCATCAGCCCAATATTTCGGGGATCCGAGTAAAGCCAATGACATGGACTCTCAAGTTTCCTEST: gi|30298086|gb|CB974880.1|CB974880
genomic: ATTGAGGAAAGTGATGAAGCTAGGAGGAAGTTCTCAAATGCAAAATCTATCTCATCAGCCCAATATTTCGGGGATCCGAGTAAAGCCAATGACATGGACTCTCAAGTTTCCT
EST: CGAGTAAAGCCAATGACATGGACTCTCAAGTTTCCTTGCAGAAGTTCTCA GGTTCAACGGCCATATCAAGTGCTGATCTCTTTGGTCACAGTTCAGATAATEST: gi|30127779|gb|CB913118.1|CB913118
genomic: CGAGTAAAGCCAATGACATGGACTCTCAAGTTTCCTTGCAGAAGTTCTCAgtatgtatcc ... cctctcttagGGTTCAACGGCCATATCAAGTGCTGATCTCTTTGGTCACAGTTCAGATAAT
EST: ATTGAGGAAAGTGATGAAGCTAGGAGGAAGTTCTCAAATGCAAAATCTATCTCATCAGCCCAATATTTCGGGGATCCGAGTAAAGCCAATGACATGGACTCTCAAGTTTCCTEST: gi|110702857|gb|EE079196.1|EE079196
genomic: ATTGAGGAAAGTGATGAAGCTAGGAGGAAGTTCTCAAATGCAAAATCTATCTCATCAGCCCAATATTTCGGGGATCCGAGTAAAGCCAATGACATGGACTCTCAAGTTTCCT
EST: ATTGAGGAAAGTGATGAAGCTAGGAGGAAGTTCTCAAATGCAAAATCTATCTCATCAGCCCAATATTTCGGGGATCCGAGTAAAGCCAATGACATGGACTCTCAAGTTTCCTEST: gi|110422737|gb|EC989065.1|EC989065
genomic: ATTGAGGAAAGTGATGAAGCTAGGAGGAAGTTCTCAAATGCAAAATCTATCTCATCAGCCCAATATTTCGGGGATCCGAGTAAAGCCAATGACATGGACTCTCAAGTTTCCT
EST: ATTGAGGAAAGTGATGAAGCTAGGAGGAAGTTCTCAAATGCAAAATCTATCTCATCAGCCCAATATTTCGGGGATCCGAGTAAAGCCAATGACATGGACTCTCAAGTTTCCT
genomic: ATTGAGGAAAGTGATGAAGCTAGGAGGAAGTTCTCAAATGCAAAATCTATCTCATCAGCCCAATATTTCGGGGATCCGAGTAAAGCCAATGACATGGACTCTCAAGTTTCCT
ttttgactcatcctggtttcatgatcttttctttaatgttcctctcctctcttagGGTTCAACGGCCATATCAAGTGCTGATCTCTTTGGTCACAGTTCAGATAATTCCCCCCTTGATGTTTCTGCCAGTGACTTGATCAATCGGCTCTCTTTCC
tcttttctttaatgtt CT-rich tract
atcttttctttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtagagaccttcagtgtggagtccaacataagattttaatagtcttttgactcatcctggtttcatgatcttttctttaatgttcctctcctctcttagGGTTCAACGGCCATATCAAGTGCTGATCTCTTTGGTCACAGTTCAGATAATTCCCCCCTTGATGTTTCTGCCAGTGACTTGATCAATCGGCTCTCTTTCC
- - - -accttca
- - - - - - - - - - - tccaaca
- - - - - - - - - - - - - - - - - - - - - - - - - -ctcatcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttcatg