1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaaagtgcttgttccattttcatctgttccgcgagatctaattttaaatgggtaatcttacttttcttttgtactatgttaaatctcttctgcagGCTGTGGTGCAGATATTCATGTGATTGTGAAAATTGAAAGTGCAGATTCCATACCAAATCTTCATTCCATTATTTCTGCTTCTGATGGG
species | Vitis vinifera |
transcript | Vv02s0012g01170.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTTTGTGAAAGATGCTGAAGTGGTCCATGAGTTGAAAGATTACCTCATAA GCTGTGGTGCAGATATTCATGTGATTGTGAAAATTGAAAGTGCAGATTCCAEST: gi|351025070|gb|FQ433487.1|FQ433487
genomic: CTTTGTGAAAGATGCTGAAGTGGTCCATGAGTTGAAAGATTACCTCAGAAgtaaagtgct ... tcttctgcagGCTGTGGTGCAGATATTCATGTGATTGTGAAAATTGAAAGTGCAGATTCCA
EST: CTTTGTGAAAGATGCTGAAGTGGTCCATGAGTTGAAAGATTACCTCAGAA GCTGTGGTGCAGATATTCATGTGATTGTGAAAATTGAAAGTGCAGATTCCAEST: gi|351014767|gb|FQ437967.1|FQ437967
genomic: CTTTGTGAAAGATGCTGAAGTGGTCCATGAGTTGAAAGATTACCTCAGAAgtaaagtgct ... tcttctgcagGCTGTGGTGCAGATATTCATGTGATTGTGAAAATTGAAAGTGCAGATTCCA
EST: CTTTGTGAAAGATGCTGAAGTGGTCCATGAGTTGAAAGATTACCTCAGAA GCTGTGGTGCAGATATTCATGTGATTGTGAAAATTGAAAGTGCAGATTCCAEST: gi|110388166|gb|EC952886.1|EC952886
genomic: CTTTGTGAAAGATGCTGAAGTGGTCCATGAGTTGAAAGATTACCTCAGAAgtaaagtgct ... tcttctgcagGCTGTGGTGCAGATATTCATGTGATTGTGAAAATTGAAAGTGCAGATTCCA
EST: CTTTGTGAAAGATGCTGAAGTGGTCCATGAGTTGAAAGATTACCTCAGAA GCTGTGGTGCAGATATTCATGTGATTGTGAAAATTGAAAGTGCAGATTCCAEST: gi|351030123|gb|FQ430865.1|FQ430865
genomic: CTTTGTGAAAGATGCTGAAGTGGTCCATGAGTTGAAAGATTACCTCAGAAgtaaagtgct ... tcttctgcagGCTGTGGTGCAGATATTCATGTGATTGTGAAAATTGAAAGTGCAGATTCCA
EST: CTTTGTGAAAGATGCTGAAGTGGTCCATGAGTTGAAAGATTACCTCAGAA GCTGTGGTGCAGATATTCATGTGATTGTGAAAATTGAAAGTGCAGATTCCAEST: gi|351027131|gb|FQ439993.1|FQ439993
genomic: CTTTGTGAAAGATGCTGAAGTGGTCCATGAGTTGAAAGATTACCTCAGAAgtaaagtgct ... tcttctgcagGCTGTGGTGCAGATATTCATGTGATTGTGAAAATTGAAAGTGCAGATTCCA
EST: CTTTGTGAAAGATGCTGAAGTGGTCCATGAGTTGAAAGATTACCTCAGAA GCTGTGGTGCAGATATTCATGTGATTGTGAAAATTGAAAGTGCAGATTCCA
genomic: CTTTGTGAAAGATGCTGAAGTGGTCCATGAGTTGAAAGATTACCTCAGAAgtaaagtgct ... tcttctgcagGCTGTGGTGCAGATATTCATGTGATTGTGAAAATTGAAAGTGCAGATTCCA
attttaaatgggtaatcttacttttcttttgtactatgttaaatctcttctgcagGCTGTGGTGCAGATATTCATGTGATTGTGAAAATTGAAAGTGCAGATTCCATACCAAATCTTCATTCCATTATTTCTGCTTCTGATGGG
atcttac putative branch site (score: 3)
tctcttctgc putative PPT
tatgttaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaagtgcttgttccattttcatctgttccgcgagatctaattttaaatgggtaatcttacttttcttttgtactatgttaaatctcttctgcagGCTGTGGTGCAGATATTCATGTGATTGTGAAAATTGAAAGTGCAGATTCCATACCAAATCTTCATTCCATTATTTCTGCTTCTGATGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT