Sequence
atgc intronic sequence ATGC exonic sequence...aatacattacctgcaggcttattctttactcttcttgctggtaggaggttaacaccctttctaataatagctgattatgctattacataattcattgcagTATGATGCGTTTGATATTGGCTTTATAACCACGGACGACTTCACAAATGCAGACATCTTGGAAGCAACTTACCCAGCTGTTGCAAAGAGGTTATATAATG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0244g00140.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA02G07300.1 (Glycine max), 3'ss of exon 5
------------------------------------------------------------aatacattacc-tgcaggcttattctttactcttcttgctggtaggaggttaacaccc-tttctaataatagctgattat-gctattacataattcattg-cagTATGATGCGTTTGATATTGGCTTTATAACCACGGACGACTTCACAAATGCAGACATCTTGGAAGCAACTTACCCAGCTGTTGCAAAGAGGTTATATAATG
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gtaagcgctatcatttgcctatttaatacatattgtgactaaaggttttttagcatttttattgctttcccatgatagcccaactctgagcaagatttcagattttgatttgttttctgtctctggtcatagtgatttattgcta--atttaattgtttgacagTATGATGCATTTGAGATTGGTTTTATAACAACTGACGACTTCACAAATGCGGACATTTTGGAAGCAACTTATCCAGCTGTTGCAAAGAGATTGCATGGTG
upper sequence: Vv01s0244g00140.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA19G27500.1 (Glycine max), 3'ss of exon 4
-----------------------aatacattacctgcaggcttattctttact--cttcttgctggtaggaggttaacaccctttctaataatagctgattatgctattacata-attcatt--gcagTATGATGCGTTTGATATTGGCTTTATAACCACGGACGACTTCACAAATGCAGACATCTTGGAAGCAACTTACCCAGCTGTTGCAAAGAGGTTATATAATG
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gtatgttttggttgcctatctaaaacttattacaaataaaaaagtttcgtaatggctgattaggattgtccaactctgaatctcgatcaatatagtttgtttctaaattttatttgtttgtttggcagTATGATGCATTTGAGATGGGTATTATAACAACTGATGACTTCACAAATGCTGACATTTTGGAAGCAACATATCCTGCTGTTGCAAAGAGGTTACATAGTG
upper sequence: Vv01s0244g00140.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA16G05380.1 (Glycine max), 3'ss of exon 4
-----------------------aatacattacctgcaggcttattctttactcttcttgctggtaggaggttaacaccctttctaataatagctgatt----atgctattacataattcatt--gcagTATGATGCGTTTGATATTGGCTTTATAACCACGGACGACTTCACAAATGCAGACATCTTGGAAGCAACTTACCCAGCTGTTGCAAAGAGGTTATATAATG
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gtatgtttttatttcctatctaaaacttattacaaataaaaaagttttgtatgattgggattgtcc--aactctgaatcttgattaatatagtttgtttctaaattttatttatttgtttgtttggtagTATGATGCATTTGAGATGGGTATTATAACATCTGATGACTTCACAAATGCTGACATTTTGGAAGCAACATATCCTGCTGTTGCAAAGAGGTTACATAGTG
upper sequence: Vv01s0244g00140.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA16G26300.1 (Glycine max), 3'ss of exon 6
-----------------------------------------aatacattacctgcaggcttattctttactcttcttgc--------tggtaggaggttaacaccctttctaataatagctgatta------tgctatta-cataattcattg-cagTATGATGCGTTTGATATTGGCTTTATAACCACGGACGACTTCACAAATGCAGACATCTTGGAAGCAACTTACCCAGCTGTTGCAAAGAGGTTATATAATG
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gtatgttttgttatttgcctatttaatacatattgtaactgaatg-gttgttagtgtttttattcgttatcttgatagcccaactcttagcaagatcttcagattttgatttgttgtctctgattggtgatttgttgctaatttaattgtttgacagTACGATGCATTTGAGATTGGTTTTATAACAACTGATGACTTCACAAATGCGGACATTTTGGAAGCAACTTATCCGGCAGTCGCCAAGAGATTACATGGTG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aggttaacaccctttctaataatagctgattatgctattacataattcattgcagTATGATGCGTTTGATATTGGCTTTATAACCACGGACGACTTCACAAATGCAGACATCTTGGAAGCAACTTACCCAGCTGTTGCAAAGAGGTTATATAATG
tattacataattcatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aatacattacctgcaggcttattctttactcttcttgctggtaggaggttaacaccctttctaataatagctgattatgctattacataattcattgcagTATGATGCGTTTGATATTGGCTTTATAACCACGGACGACTTCACAAATGCAGACATCTTGGAAGCAACTTACCCAGCTGTTGCAAAGAGGTTATATAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - cattacc
- - - - - - gcaggct
- - - - - - - - - - - - - - - - - ttgctgg