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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacttccattcattcttgccttacatttggctagtttttcacttacattatttgttttttcttcttcttattcttctccatttctcctcagAATCTTTGCAGCTTTGGACCCCCACTGCCATCTCTGTTGGCATGCAACTCTACCCAGCTTAATTCTTATGCAGAAACATCACTCACTTCTTCATTTTCAC

Basic information

species Vitis vinifera
transcript Vv01s0244g00010.t01
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110697604|gb|EE074737.1|EE074737
EST:     TGCTGATTGGACATGAAGCAAATTTGGATTCAAACACACTCCATTCAGAG                         AATCTTTGCAGCTTTGGACCCCCACTGCCATCTCTGTTGGCATGCAACTTT
genomic: TGCTGATAGGACATGAAGCAAATTTGGATTCAAGCACACTCCAATCAGAGgtacttccat ... ttctcctcagAATCTTTGCAGCTTTGGACCCCCACTGCCATCTCTGTTGGCATGCAACTCT
EST: gi|110714473|gb|EE091418.1|EE091418
EST:     TGCTGATTGGACATGAAGCAAATTTGGATTCAAACACACTCCATTCAGAG                         AATCTTTGCAGCTTTGGACCCCCACTGCCATCTCTGTTGGCATGCAACTTT
genomic: TGCTGATAGGACATGAAGCAAATTTGGATTCAAGCACACTCCAATCAGAGgtacttccat ... ttctcctcagAATCTTTGCAGCTTTGGACCCCCACTGCCATCTCTGTTGGCATGCAACTCT
EST: gi|32245670|gb|CD711489.1|CD711489
EST:     TGCTGATTGGACATGAAGCAAATTTGGATTCAAACACACTCCAATCAGAG                         AATCTTTGCAGCTTTGGACCCCCACTGCCATCTCTGTTGGCATGCAACTCT
genomic: TGCTGATAGGACATGAAGCAAATTTGGATTCAAGCACACTCCAATCAGAGgtacttccat ... ttctcctcagAATCTTTGCAGCTTTGGACCCCCACTGCCATCTCTGTTGGCATGCAACTCT
EST: gi|34416539|gb|CF415293.1|CF415293
EST:     TGCTGATTGGACATGAAGCAAATTTGGATTCAAGCACACTCCAATCAGAG                         AATCTTTGCAGCTTTGGACCCCCGCTGCCATCTCTGTTGGCATGCAACTCT
genomic: TGCTGATAGGACATGAAGCAAATTTGGATTCAAGCACACTCCAATCAGAGgtacttccat ... ttctcctcagAATCTTTGCAGCTTTGGACCCCCACTGCCATCTCTGTTGGCATGCAACTCT
EST: gi|110424499|gb|EC990862.1|EC990862
EST:     TGCTGATTGGACATGAAGCAAATTTGGATTCAAACACACTCCATTCAGAG                         AATCTTTGCAGCTTTGGACCCCCACTGCCATCTCTGTTGGCATGCAACTTT
genomic: TGCTGATAGGACATGAAGCAAATTTGGATTCAAGCACACTCCAATCAGAGgtacttccat ... ttctcctcagAATCTTTGCAGCTTTGGACCCCCACTGCCATCTCTGTTGGCATGCAACTCT
EST: gi|30135269|gb|CB920607.1|CB920607
EST:     TGCTGATTGGACATGAAGCAAATTTGGATTCAAACACACTCCAATCAGAG                         AATCTTTGCAGCTTTGGACCCCCACTGCCATCTCTGTTGGCATGCAACTCT
genomic: TGCTGATAGGACATGAAGCAAATTTGGATTCAAGCACACTCCAATCAGAGgtacttccat ... ttctcctcagAATCTTTGCAGCTTTGGACCCCCACTGCCATCTCTGTTGGCATGCAACTCT
EST: gi|110695430|gb|EE073439.1|EE073439
EST:     TGCTGATAGGACATGAAGCAAATTTGGATTCAAGCACACTCCAATCAGAG                         AATCTTTGCAGCTTTGGACCCCCACTGCCATCTCTGTTGGCATGCAACTCT
genomic: TGCTGATAGGACATGAAGCAAATTTGGATTCAAGCACACTCCAATCAGAGgtacttccat ... ttctcctcagAATCTTTGCAGCTTTGGACCCCCACTGCCATCTCTGTTGGCATGCAACTCT
EST: gi|110405475|gb|EC971016.1|EC971016
EST:     TGCTGATTGGACATGAAGCAAATTTGGATTCAAACACACTCCAATCAGAG                         AATCTTTGCAGCTTTGGACCCCCACTGCCATCTCTGTTGGCATGCAACTCT
genomic: TGCTGATAGGACATGAAGCAAATTTGGATTCAAGCACACTCCAATCAGAGgtacttccat ... ttctcctcagAATCTTTGCAGCTTTGGACCCCCACTGCCATCTCTGTTGGCATGCAACTCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttcacttacattatttgttttttcttcttcttattcttctccatttctcctcagAATCTTTGCAGCTTTGGACCCCCACTGCCATCTCTGTTGGCATGCAACTCTACCCAGCTTAATTCTTATGCAGAAACATCACTCACTTCTTCATTTTCAC
   cacttac  putative branch site (score: 2)
              tttgttttttcttctt  putative PPT
      ttacattatttgtttt  TA-rich tract