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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacttggaaatcattgtcagatactttgcatcttattaaagtcctatttgggttccaagttcaccaatgtttggtgctttccagGCAGATTCATTTGAACACCATGATTCGTATTGGGGGAGTTGTAACCCGACGTTCTGGGGTCTTCCCACAGTTACAGCAGGTAAAGTATGACTGCAACAAA

Basic information

species Vitis vinifera
transcript Vv01s0150g00390.t01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0150g00390.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GRMZM2G139894_T01 (Zea mays), 3'ss of exon 6
gtaacttggaaatcattgtcagatactttgcatcttattaaagtcctatttgggttccaagttcaccaatgtttggtgctttccagGCAGATTCATTTGAACACCATGATTCGTATTGGGGGAGTTGTAACCCGACGTTCTGGGGTCTTCCCACAGTTACAGCAGGTAAAGTATGACTGCAACAAA
|||| | | | |   |  |  |   | ||     | || |      |  || |||   | || |  ||     ||    | | |||||| || ||| ||||||| |||||||| ||||| || ||||| |||||||| ||||| || ||||| ||| | |||||||| ||||||||||| ||||||
gtaaatggcacagtttactttgtatcctttagcttcatgatcaatttgatttggtctaatgtcctaca-----tgcctttgttcagGCAAATCCATCTGAACACAATGATTCGAATTGGTGGTGTTGTTACCCGACGATCTGGTGTATTCCCTCAGCTGCAGCAGGTGAAGTATGACTGTAACAAA

upper sequence: Vv01s0150g00390.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA17G03920.1 (Glycine max), 3'ss of exon 5
gtaacttggaaatcattgtcagatactttgcatcttattaaagtcctat---ttgggttccaagttcaccaatgtttggtgctttccagGCAGATTCATTTGAACACCATGATTCGTATTGGGGGAGTTGTAACCCGACGTTCTGGGGTCTTCCCACAGTTACAGCAGGTAAAGTATGACTGCAACAAA
|||  |   ||| |||     |||   || |  | |  |     ||| |   |||| |   ||  | |  | ||  |  |      ||||||||| || ||||| || ||||| || ||||||||||| |||||| |||||||||| || ||||| ||||| |||||||| ||||||||||| ||||||
gtagataaaaaaacataact-gatgtgttactccattctccttccctttccattggatgaaaaacttaaaattggcttctttggagcagGCAGATCCACTTGAATACAATGATCCGAATTGGGGGAGTAGTAACCAGACGTTCTGGAGTTTTCCCCCAGTTGCAGCAGGTGAAGTATGACTGTAACAAA

upper sequence: Vv01s0150g00390.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA07G36680.1 (Glycine max), 3'ss of exon 5
gtaacttggaaatcattgtcagatactttgcatcttattaaagtcctatttgggttccaagttcaccaatgtttggtgctttccagGCAGATTCATTTGAACACCATGATTCGTATTGGGGGAGTTGTAACCCGACGTTCTGGGGTCTTCCCACAGTTACAGCAGGTAAAGTATGACTGCAACAAA
|||      |||  | ||     |   |    |||  ||    | | | | |      ||  | |  | || ||  |      ||||||||| || ||||| || ||||| || ||||||||||| |||||| |||||||||| || ||||| ||||| |||||||| ||||||||||| ||||||
gtagagaaaaaaaaactgatgtgttactccattctccttccctttccaatggatgaaaaaacttaaaattggtttctttggagcagGCAGATCCACTTGAATACAATGATCCGAATTGGGGGAGTAGTAACCAGACGTTCTGGAGTTTTCCCCCAGTTGCAGCAGGTGAAGTATGACTGTAACAAA

upper sequence: Vv01s0150g00390.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: AT1G44900.1 (Arabidopsis thaliana), 3'ss of exon 4
------gtaacttggaaatcattgtcagatactttgcatcttattaaagtcctatttgggttccaagttcacc---aatgtttggtgctttccagGCAGATTCATTTGAACACCATGATTCGTATTGGGGGAGTTGTAACCCGACGTTCTGGGGTCTTCCCACAGTTACAGCAGGTAAAGTATGACTGCAACAAA
       || |   ||| |||| |  ||  |||   ||  || |  |  |  |     | || ||| || | |   | ||||||    ||  ||||||||||||| | ||||| ||||| ||||| || |||||||| ||  | |||||||||||||| || ||| | ||||| || || ||||| || ||||| 
gtaataatatcgctgaattcatgggtagtgact---cactttgtatacatttt--caagatttcaacttaaaccttattgtttgtgaattgtcagGCAGATTCATCTTAACACGATGATCCGTATCGGTGGAGTTGTCACTAGGCGTTCTGGGGTCTTTCCTCAGCTGCAGCAAGTGAAATATGATTGTAACAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcttattaaagtcctatttgggttccaagttcaccaatgtttggtgctttccagGCAGATTCATTTGAACACCATGATTCGTATTGGGGGAGTTGTAACCCGACGTTCTGGGGTCTTCCCACAGTTACAGCAGGTAAAGTATGACTGCAACAAA
                                             tgctttcc  CT-rich tract
     attaaagt  TA-rich tract