Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaataaattaatttacaatcaaattgtcatccttttgagggtttaaaactcaggacctaatatcatgggacttttatatgttctagGCTGCAGTAGCTCAAGCAGCACTGGCATACCAGCTCTACCAGAAGAAATTCTCTGGGCCTAGATGGGAAGCTCTGGTGAAGAAAGGTGCCAAGAAACAGA

Basic information

species Vitis vinifera
transcript Vv01s0150g00190.t01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0150g00190.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: LOC_Os01g70170.1 (Oryza sativa), 3'ss of exon 4
------gtaat-aaattaatttacaatcaaattgtcatccttttgagggtttaaaactcaggacctaatat-catgg-gacttttatatgttctagGCTGCAGTAGCTCAAGCAGCACTGGCATACCAGCTCTACCAGAAGAAATTCTCTGGGCCTAGATGGGAAGCTCTGGTGAAGAAAGGTGCCAAGAAACAGA
        ||| ||| | |  | |   | || |   | | ||  ||   |  |||      |  ||||| | |||   |     | | | ||  ||||||| ||||| || |||   || ||  ||||||| |||||||||||||||||||| || || ||||| ||| |||| ||||||||||||||||| ||||
gtacgcacaatcaaaattacatgcctcctaagtcctagcattaggaatttccaaactagcagttctaatctgcattttggtcactctgtattacagGCTGCTGTAGCACAGGCAAAGCTAGCCAACCAGCTTTACCAGAAGAAATTCTCTGGCCCGAGGTGGGAGGCTTTGGTCAAGAAAGGTGCCAAGAAGCAGA

upper sequence: Vv01s0150g00190.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GRMZM2G134256_T02 (Zea mays), 3'ss of exon 3
gtaataaattaatttacaatcaa-attgtcatccttttgagggttta-aaactcaggacctaatatcatgggacttttatatgttctagGCTGCAGTAGCTCAAGCAGCACTGGCATACCAGCTCTACCAGAAGAAATTCTCTGGGCCTAGATGGGAAGCTCTGGTGAAGAAAGGTGCCAAGAAACAGA-------------------------
         ||| |  |  |  |  ||   | | |||  |  ||  | ||| | | |    ||||| |    ||| |   ||||   ||||||||||||| || ||   ||| ||| | | |||||||||||||||||||||||| || || ||||| ||  |||  |||||||||||||||||||| |                         
---------taactgcctcttgatgttagaaacttttaaactgtccacaaagttatg---caatatgaccatactctatcatgtc--aggctgcagtagcacaggccaaactagCAAATCGGCTCTACCAGAAGAAATTCTCTGGCCCAAGGTGGGAGGCGTTGGCCAAGAAAGGTGCCAAGAAACAAAGGTTGTTGTGGGCATCCACCGGTGT

upper sequence: Vv01s0150g00190.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GRMZM2G134256_T01 (Zea mays), 3'ss of exon 4
gtaataaattaatttacaatcaaattgtcatc--cttttgagggtttaaaact---caggacctaatatcatgggacttttatatgttct---agGCTGCAGTAGCTCAAGCAGCACTGGCATACCAGCTCTACCAGAAGAAATTCTCTGGGCCTAGATGGGAAGCTCTGGTGAAGAAAGGTGCCAAGAAACAGA
    ||||  ||  || ||| || |     |     || ||   ||| |||||   ||  |  | ||   ||  |||  |  | | |  |   ||||||||||||| || ||   ||| ||| | | |||||||||||||||||||||||| || || ||||| ||  |||  |||||||||||||||||||| |
---gtaaacaaaactataattaactgcctcttgatgttagaaacttttaaactgtccacaaagttatgcaatatgaccatactctatcatgtcagGCTGCAGTAGCACAGGCCAAACTAGCAAATCGGCTCTACCAGAAGAAATTCTCTGGCCCAAGGTGGGAGGCGTTGGCCAAGAAAGGTGCCAAGAAACAAA

upper sequence: Vv01s0150g00190.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GRMZM5G828312_T02 (Zea mays), 3'ss of exon 1
gtaataaattaatttacaatcaaattgtcatccttttgagggtttaaaactcaggacctaatatcatgggacttttatatgttctagGCTGCAGT-AGCTCAAGCAGCACTGGCATACCAGCTCTACCAGAAGAAATTCTCTGGGCCTAGATGGGAAGCTCTGGTGAAGAAAGGTGCCAAGAAACAGA--------------------------------------------------------------
                                                                                     ||||||| ||  || || ||   ||| ||| | | | |||||||||||||||||||||| || || ||||| ||  |||  ||||||||||||||||||||||                                                              
--------------------------------------------------nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaggctgccgttggcacaggcccaactagcaaatcgggtctaccagaagaaattctctggcccgagGTGGGAGGCGTTGGCCAAGAAAGGTGCCAAGAAACAGAGGTTGTTGTGGGCATCCACCCGGTGTCAAGAACCCAGCTTATCCCGACACTCTTTACATCGA

upper sequence: Vv01s0150g00190.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA08G47790.2 (Glycine max), 3'ss of exon 6
---gtaataaattaatttacaatcaaattgtcatcctt--ttgagggtttaaaactc-----aggacctaata---tcatgggac----ttttatatgttctagGCTGCAGTAGCTCAAGCAGCACTGGCATACCAGCTCTACCAGAAGAAATTCTCTGGGCCTAGATGGGAAGCTCTGGTGAAGAAAGGTGCCAAGAAACAGA
       |  |||  ||| ||| | ||||   || |||   |  || ||||  || |     |    | ||||   || | |||     | ||  || ||  |||| |||||||| ||||||||| |||| |||||||||||||| | |||||| ||||| || || ||||||||||| || || || || |||||||| || |
gtaactgtttattgttttccaaactaatttctattcttggctttggatttattacactttcaaatgtcaaatatgctcttcggattgcatattgaattttacagGCAGCAGTAGCCCAAGCAGCATTGGCTTACCAGCTCTACCAAAGGAAATTTTCTGGTCCAAGGTGGGAAGCTCTAGTTAAAAAGGGGGCCAAGAAGCAAA

upper sequence: Vv01s0150g00190.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA18G53700.1 (Glycine max), 3'ss of exon 5
---------------------gtaataaattaatttacaatcaaattgtcatccttttgagggtttaaaactcaggacctaatatcatgggacttttatatgttctagGCTGCAGTAGCTCAAGCAGCACTGGCATACCAGCTCTACCAGAAGAAATTCTCTGGGCCTAGATGGGAAGCTCTGGTGAAGAAAGGTGCCAAGAAACAGA
                       | | || | |||  |  |  | || |||  |||| ||  ||  || |  | |  |  | ||  || | || || | || ||  |||| || ||||| ||||||||| |||| |||||||||||||| | |||||| ||||| || || ||||||||||| || || || || |||||||| ||  
ggtaactgtttattgttttccaaatttaaattattacctttggatttatcacactttcgaatgtcaaatatgctgtgctca-taggattgcacattga-attttacaGGCAGCGGTAGCCCAAGCAGCATTGGCTTACCAGCTCTACCAAAGGAAATTTTCTGGTCCAAGGTGGGAAGCTCTAGTTAAAAAGGGGGCCAAGAAGCAA-

upper sequence: Vv01s0150g00190.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA18G19380.1 (Glycine max), 3'ss of exon 4
---gtaataaattaatttacaatcaaattgtcatcct----tttgagggtttaaaactc---aggacctaata---tcatgggact-tttat---atgttctagGCTGCAGTAGCTCAAGCAGCACTGGCATACCAGCTCTACCAGAAGAAATTCTCTGGGCCTAGATGGGAAGCTCTGGTGAAGAAAGGTGCCAAGAAACAGA
    |  |  |||  ||| ||| ||||||   || ||    ||||    | | | |||    |    | ||||   |||| ||| |  ||||   || || ||||  |||||||| ||||||||| |||| |||||||||||||| | |||||| | | | || || ||||||| ||| || || || ||  ||||||| || |
gtaattgtttattgttttccaaacaaatttctattctagcctttggatttattacactttcaaatgtcaaatatgctcattggattgcttattgaattttatagGTAGCAGTAGCCCAAGCAGCATTGGCTTACCAGCTCTACCAAAGGAAATTTTATAGTCCAAGGTGGGAAGTTCTAGTTAAAAAGGGGACCAAGAACCAAA

upper sequence: Vv01s0150g00190.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: AT5G13420.1 (Arabidopsis thaliana), 3'ss of exon 5
gtaataaattaatttacaatcaaattgtcatccttttgagggtttaaaactcaggacctaatatcatgggacttttata-tgttctagGCTGCAGTAGCTCAAGCAGCACTGGCATACCAGCTCTACCAGAAGAAATTCTCTGGGCCTAGATGGGAAGCTCTGGTGAAGAAAGGTGCCAAGAAACAGA
|||| |  |  ||| |      |  | | |  |     |  ||    |    |  | || ||  ||   ||  | | || | ||  |||| || || |||||||| ||| | |||||| |||| |||||| ||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||
gtaa-agctctattcatcgctgagatcttacaccagccactgtgagtagagtattagcttatgacacatgatatgtttactcttgcagGCGGCTGTGGCTCAAGCTGCATTAGCATACAAGCTATACCAGCAGAAATTCTCTGGCCCAAGATGGGAAGCTCTGGTAAAGAAAGGTGCCAAGAAACAGA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349823458|gb|FQ414868.1|FQ414868
EST:     AGTTGCTTGAGAAAATTGGAACTCCAGAGGCCCTTGATCTCCGAGGAAAG                         GCTGCAGTAGCTCAAGCAGCACTGGCATACCAGCTCTACCAGAAGAAATTC
genomic: AGTTGCTTGAGAAAATTGGAACTCCAGAGGCCCTTGATCTCCGAGGAAAGgtaataaatt ... tatgttctagGCTGCAGTAGCTCAAGCAGCACTGGCATACCAGCTCTACCAGAAGAAATTC
EST: gi|110699485|gb|EE076526.1|EE076526
EST:     AGTTGCTTGAGAAAATTGGAACTCCAGAGGCCCTTGATCTCCGAGGAAAG                         GCTGCAGTAGCTCAAGCAGCACTGGCATACCAGCTCTACCAGAAGAAATTC
genomic: AGTTGCTTGAGAAAATTGGAACTCCAGAGGCCCTTGATCTCCGAGGAAAGgtaataaatt ... tatgttctagGCTGCAGTAGCTCAAGCAGCACTGGCATACCAGCTCTACCAGAAGAAATTC
EST: gi|110425273|gb|EC991655.1|EC991655
EST:     AGTTGCTTGAGAAAATTGGAACTCCAGAGGCCCTTGATCTCCGAGGAAAG                         GCTGCAGTAGCTCAAGCAGCACTGGCATACCAGCTCTACCAGAAGAAATTC
genomic: AGTTGCTTGAGAAAATTGGAACTCCAGAGGCCCTTGATCTCCGAGGAAAGgtaataaatt ... tatgttctagGCTGCAGTAGCTCAAGCAGCACTGGCATACCAGCTCTACCAGAAGAAATTC
EST: gi|33410187|gb|CF215814.1|CF215814
EST:     AGTTGCTTGAGAAAATTGGAACTCCAGAGGCCCTTGATCTCCGAGGAAAG                         GCTGCAGTAGCTCAAGCAGCACTGGCATACCAGCTCTACCAGAAGAAATTC
genomic: AGTTGCTTGAGAAAATTGGAACTCCAGAGGCCCTTGATCTCCGAGGAAAGgtaataaatt ... tatgttctagGCTGCAGTAGCTCAAGCAGCACTGGCATACCAGCTCTACCAGAAGAAATTC
EST: gi|110732932|gb|EE108661.1|EE108661
EST:     AGTTGCTTGAGAAAATTGGAACTCCAGAGGCCCTTGATCTCCGAGGAAAG                         GCTGCAGTAGCTCAAGCAGCACTGGCATACCAGCTCTACCAGAAGAAATTC
genomic: AGTTGCTTGAGAAAATTGGAACTCCAGAGGCCCTTGATCTCCGAGGAAAGgtaataaatt ... tatgttctagGCTGCAGTAGCTCAAGCAGCACTGGCATACCAGCTCTACCAGAAGAAATTC
EST: gi|161720858|gb|FC069604.1|FC069604
EST:     AGTTGCTTGAGAAAATTGGAACTCCAGAGGCCCTTGATCTCCGAGGAAAG                         GCTGCAGTAGCTCAAGCAGCACTGGCATACCAGCTCTACCAGAAGAAATTC
genomic: AGTTGCTTGAGAAAATTGGAACTCCAGAGGCCCTTGATCTCCGAGGAAAGgtaataaatt ... tatgttctagGCTGCAGTAGCTCAAGCAGCACTGGCATACCAGCTCTACCAGAAGAAATTC
EST: gi|33404929|gb|CF210556.1|CF210556
EST:     AGTTGCTTGAGAAAATTGGAACTCCAGAGGCCCTTGATCTCCGAGGAAAG                         GCTGCAGTAGCTCAAGCAGCACTGGCATACCAGCTCTACCAGAAGAAATTC
genomic: AGTTGCTTGAGAAAATTGGAACTCCAGAGGCCCTTGATCTCCGAGGAAAGgtaataaatt ... tatgttctagGCTGCAGTAGCTCAAGCAGCACTGGCATACCAGCTCTACCAGAAGAAATTC
EST: gi|110697187|gb|EE073956.1|EE073956
EST:     AGTTGCTTGAGAAAATTGGAACTCCAGAAGCCCTTGATCTCCGAGGAAAA                         GCTGCAGTANCTCAAGCAGCACTGGCATACCAGCTCTAACAGAAAAAATTC
genomic: AGTTGCTTGAGAAAATTGGAACTCCAGAGGCCCTTGATCTCCGAGGAAAGgtaataaatt ... tatgttctagGCTGCAGTAGCTCAAGCAGCACTGGCATACCAGCTCTACCAGAAGAAATTC
EST: gi|45770967|gb|CN006819.1|CN006819
EST:     AG-TGCTNGAGAAAA-TGGAACTCCAGAGGCCC-TGATCTCCGAGGAAAG                         GCTGCAGTAGCTCAAGCAGCACTGGCATACCAGCTCTACCAGAAGAAATTC
genomic: AGTTGCTTGAGAAAATTGGAACTCCAGAGGCCCTTGATCTCCGAGGAAAGgtaataaatt ... tatgttctagGCTGCAGTAGCTCAAGCAGCACTGGCATACCAGCTCTACCAGAAGAAATTC
EST: gi|33404431|gb|CF210058.1|CF210058
EST:     AGTTGCTTGAGAAAATTGGAACTCCAGAGGCCCTTGATCTCCGAGGAAAG                         GCTGCAGTAGCTCAAGCAGCACTGGCATACCAGCTCTACCAGAAGAAATTC
genomic: AGTTGCTTGAGAAAATTGGAACTCCAGAGGCCCTTGATCTCCGAGGAAAGgtaataaatt ... tatgttctagGCTGCAGTAGCTCAAGCAGCACTGGCATACCAGCTCTACCAGAAGAAATTC
EST: gi|110361653|gb|EC925142.1|EC925142
EST:     AGTTGCTTGAGAAAATTGGAACTCCAGAGGCCCTTGATCTCCGAGGAAAG                         GCTGCAGTAGCTCAAGCAGCACTGGCATACCAGCTCTACCAGAAGAAATTC
genomic: AGTTGCTTGAGAAAATTGGAACTCCAGAGGCCCTTGATCTCCGAGGAAAGgtaataaatt ... tatgttctagGCTGCAGTAGCTCAAGCAGCACTGGCATACCAGCTCTACCAGAAGAAATTC
EST: gi|56409396|gb|CX017648.1|CX017648
EST:     AGTTGCTTGAGAAAATTGGAACTCCAGAGGCCCTTGATCTCCGAGGAAAG                         GCTGCAGTAGCTCAAGCAGCACTGGCATACCAGCTCTACCAGAAGAAATTC
genomic: AGTTGCTTGAGAAAATTGGAACTCCAGAGGCCCTTGATCTCCGAGGAAAGgtaataaatt ... tatgttctagGCTGCAGTAGCTCAAGCAGCACTGGCATACCAGCTCTACCAGAAGAAATTC
EST: gi|351024148|gb|FQ423571.1|FQ423571
EST:     AGTTGCTTGAGAAAATTGGAACTCCAGAGGCCCTTGATCTCCGAGGAAAG                         GCTGCAGTAGCTCAAGCAGCACTGGCATACCAGCTCTACCAGAAGAAATTC
genomic: AGTTGCTTGAGAAAATTGGAACTCCAGAGGCCCTTGATCTCCGAGGAAAGgtaataaatt ... tatgttctagGCTGCAGTAGCTCAAGCAGCACTGGCATACCAGCTCTACCAGAAGAAATTC
EST: gi|56409030|gb|CX017282.1|CX017282
EST:     AGTTGCTTGAGAAAATTGGAACTCCAGAGGCCCTTGATCTCCGAGGAAAG                         GCTGCAGTAGCTCAAGCAGCACTGGCATACCAGCTCTACCAGAAGAAATTC
genomic: AGTTGCTTGAGAAAATTGGAACTCCAGAGGCCCTTGATCTCCGAGGAAAGgtaataaatt ... tatgttctagGCTGCAGTAGCTCAAGCAGCACTGGCATACCAGCTCTACCAGAAGAAATTC
EST: gi|110685775|gb|EE062800.1|EE062800
EST:     AGTTGCTTGAGAAAATTGGAACTCCAGAGGCCCTTGATCTCCGAGGAAAG                         GCTGCAGTAGCTCAAGCAGCACTGGCATACCAGCTCTACCAGAAGAAATTC
genomic: AGTTGCTTGAGAAAATTGGAACTCCAGAGGCCCTTGATCTCCGAGGAAAGgtaataaatt ... tatgttctagGCTGCAGTAGCTCAAGCAGCACTGGCATACCAGCTCTACCAGAAGAAATTC
EST: gi|71882129|gb|DT031184.1|DT031184
EST:     AGTTGCTTGAGAAAATTGGAACTCCAGAGGCCCTTGATCTCCGAGGAAAG                         GCTGCAGTAGCTCAAGCAGCACTGGCATACCAGCTCTACCAGAAGAAATTC
genomic: AGTTGCTTGAGAAAATTGGAACTCCAGAGGCCCTTGATCTCCGAGGAAAGgtaataaatt ... tatgttctagGCTGCAGTAGCTCAAGCAGCACTGGCATACCAGCTCTACCAGAAGAAATTC
EST: gi|351033461|gb|FQ462112.1|FQ462112
EST:     AGTTGCTTGAGAAAATTGGAACTCCAGAGGCCCTTGATCTCCGAGGAAAG                         GCTGCAGTAGCTCAAGCAGCACTGGCATACCAGCTCTACCAGAAGAAATTC
genomic: AGTTGCTTGAGAAAATTGGAACTCCAGAGGCCCTTGATCTCCGAGGAAAGgtaataaatt ... tatgttctagGCTGCAGTAGCTCAAGCAGCACTGGCATACCAGCTCTACCAGAAGAAATTC
EST: gi|110700295|gb|EE078171.1|EE078171
EST:     AGTTGCTTGAGAAAATTGGAACTCCAGAGGCCCTTGATCTCCGAGGAAAG                         GCTGCAGTAGCTCAAGCAGCACTGGCATACCAGCTCTACCAGAA-AAATTC
genomic: AGTTGCTTGAGAAAATTGGAACTCCAGAGGCCCTTGATCTCCGAGGAAAGgtaataaatt ... tatgttctagGCTGCAGTAGCTCAAGCAGCACTGGCATACCAGCTCTACCAGAAGAAATTC
EST: gi|110426431|gb|EC992841.1|EC992841
EST:     AGTTGCTTGAGAAAATTGGAACTCCAGAGGCCCTTGATCTCCGAGGAAAG                         GCTGCAGTAGCTCAAGCAGCACTGGCATACCAGCTCTACCAGAAGAAATTC
genomic: AGTTGCTTGAGAAAATTGGAACTCCAGAGGCCCTTGATCTCCGAGGAAAGgtaataaatt ... tatgttctagGCTGCAGTAGCTCAAGCAGCACTGGCATACCAGCTCTACCAGAAGAAATTC
EST: gi|30296452|gb|CB973246.1|CB973246
EST:     AGTTGCTTGAGAAAATTGGAACTCCAGAGGCCCTTGATCTCCGAGGAAAG                         GCTGCAGTAGCTCAAGCAGCACTGGCATACCAGCTCTACCAGAAGAAATTC
genomic: AGTTGCTTGAGAAAATTGGAACTCCAGAGGCCCTTGATCTCCGAGGAAAGgtaataaatt ... tatgttctagGCTGCAGTAGCTCAAGCAGCACTGGCATACCAGCTCTACCAGAAGAAATTC
EST: gi|110390253|gb|EC955153.1|EC955153
EST:     AGTTGCTTGAGAAAATTGGAACTCCAGAGGCCCTTGATCTCCGGGGAAAG                         GCTGCAGTAGCTCAAGCAGCACTGGCATACCAGCTCTACCAGAAGAAATTC
genomic: AGTTGCTTGAGAAAATTGGAACTCCAGAGGCCCTTGATCTCCGAGGAAAGgtaataaatt ... tatgttctagGCTGCAGTAGCTCAAGCAGCACTGGCATACCAGCTCTACCAGAAGAAATTC
EST: gi|110687643|gb|EE065283.1|EE065283
EST:     AGTTGCTTGAGAAAATTGGAACTCCAGAGGCCCTTGATCTCCGAGGAAAG                         GCTGCAGTAGCTCAAGCAGCACTGGCATACCAGCTCTACCAGAAGAAATTC
genomic: AGTTGCTTGAGAAAATTGGAACTCCAGAGGCCCTTGATCTCCGAGGAAAGgtaataaatt ... tatgttctagGCTGCAGTAGCTCAAGCAGCACTGGCATACCAGCTCTACCAGAAGAAATTC
EST: gi|110363280|gb|EC926857.1|EC926857
EST:     AGTTGCTTGAGAAAATTGGAACTCCAGAGGCCCTTGATCTCCGAGGAAAG                         GCTGCAGTAGCTCAAGCAGCACTGGCATACCAGCTCTACCAGAAGAAATTC
genomic: AGTTGCTTGAGAAAATTGGAACTCCAGAGGCCCTTGATCTCCGAGGAAAGgtaataaatt ... tatgttctagGCTGCAGTAGCTCAAGCAGCACTGGCATACCAGCTCTACCAGAAGAAATTC
EST: gi|83275156|gb|DV939252.1|DV939252
EST:     AG-TGCTTGAGAAAATT-GAACTCCAGAGGCCCTTGATCTCCGAGGAAAG                         GCTGCAGTAGCTCAAGCAGCACTGGCATACCAGCTCTACCAGAAGAAATTC
genomic: AGTTGCTTGAGAAAATTGGAACTCCAGAGGCCCTTGATCTCCGAGGAAAGgtaataaatt ... tatgttctagGCTGCAGTAGCTCAAGCAGCACTGGCATACCAGCTCTACCAGAAGAAATTC
EST: gi|110713755|gb|EE089953.1|EE089953
EST:     GTTGCTTGA-AAAATTTGGA-CTCCAGAGGCCCTTGATCTCCGAAGAAAA                         GCTGCAGTAACTCAAGCAGCACTTGCATACCAGCTCTACCAAAATAAATTC
genomic: GTTGCTTGAGAAAATT-GGAACTCCAGAGGCCCTTGATCTCCGAGGAAAGgtaataaatt ... tatgttctagGCTGCAGTAGCTCAAGCAGCACTGGCATACCAGCTCTACCAGAAGAAATTC
EST: gi|110700719|gb|EE077621.1|EE077621
EST:     AGTTGCTTGAGAAAATTGGAACTCCAGAGGCCCTTGATCTCCGAGGAAAG                         GCTGCAGTAGCTCAAGCAGCACTGGCATACCAGCTCTACCAGAAGAAATTC
genomic: AGTTGCTTGAGAAAATTGGAACTCCAGAGGCCCTTGATCTCCGAGGAAAGgtaataaatt ... tatgttctagGCTGCAGTAGCTCAAGCAGCACTGGCATACCAGCTCTACCAGAAGAAATTC
EST: gi|33404504|gb|CF210131.1|CF210131
EST:     AGTTGCTTGAGAAAATTGGAACTCCAGAGGCCCTTGATCTCCGAGGAAAG                         GCTGCAGTAGCTCAAGCAGCACTGGCATACCAGCTCTACCAGAAGAAATTC
genomic: AGTTGCTTGAGAAAATTGGAACTCCAGAGGCCCTTGATCTCCGAGGAAAGgtaataaatt ... tatgttctagGCTGCAGTAGCTCAAGCAGCACTGGCATACCAGCTCTACCAGAAGAAATTC
EST: gi|56409430|gb|CX017682.1|CX017682
EST:     AGTTGCTTGAGAAAATTGGAACTCCAGAGGCCCTTGATCTCCGAGGAAAG                         GCTGCAGTAGCTCAAGCAGCACTGGCATACCAGCTCTACCAGAAGAAATTC
genomic: AGTTGCTTGAGAAAATTGGAACTCCAGAGGCCCTTGATCTCCGAGGAAAGgtaataaatt ... tatgttctagGCTGCAGTAGCTCAAGCAGCACTGGCATACCAGCTCTACCAGAAGAAATTC
EST: gi|161706515|gb|FC055036.1|FC055036
EST:     AGTTGCTTGAGAAAATTGGAACTCCAGAGGCCCTTGATCTCCGAGGAAAG                         GCTGCAGTAGCTCAAGCAGCACTGGCATACCAGCTCTACCAG
genomic: AGTTGCTTGAGAAAATTGGAACTCCAGAGGCCCTTGATCTCCGAGGAAAGgtaataaatt ... tatgttctagGCTGCAGTAGCTCAAGCAGCACTGGCATACCAGCTCTACCAG
EST: gi|45771011|gb|CN006863.1|CN006863
EST:     TGAG-AAATTGG-ACTCCAGA-GCCCCTGATCTCCGAGGAAAG                         GCTGCAGTAGCTCAAGCAGCACTGGCATACCAGCTCTACCAGAAGAAATTC
genomic: TGAGAAAATTGGAACTCCAGAGGCCCTTGATCTCCGAGGAAAGgtaataaatt ... tatgttctagGCTGCAGTAGCTCAAGCAGCACTGGCATACCAGCTCTACCAGAAGAAATTC
EST: gi|45368195|gb|CK906554.1|CK906554
EST:     AGTTGCTTGAGAAAATTGGAACTCCAGAGGCCCTTGATCTCCGAGGAAAG                         GCTGCAGTAGCTCAAGCAGCACTGGCATACCAGCTCTACCAGAAGAAATTC
genomic: AGTTGCTTGAGAAAATTGGAACTCCAGAGGCCCTTGATCTCCGAGGAAAGgtaataaatt ... tatgttctagGCTGCAGTAGCTCAAGCAGCACTGGCATACCAGCTCTACCAGAAGAAATTC
EST: gi|33407548|gb|CF213175.1|CF213175
EST:     AGTTGCTTGAGAAAATTGGAACTCCAGAGGCCCTTGATCTCCGAGGAAAG                         GCTGCAGTAGCTCAAGCAGCACTGGCATACCAGCTCTACCAGAAGAAATTC
genomic: AGTTGCTTGAGAAAATTGGAACTCCAGAGGCCCTTGATCTCCGAGGAAAGgtaataaatt ... tatgttctagGCTGCAGTAGCTCAAGCAGCACTGGCATACCAGCTCTACCAGAAGAAATTC
EST: gi|71874490|gb|DT023545.1|DT023545
EST:     AGTTGCTTGAGAAAATTGGAACTCCAGAGGCCCTTGATCTCCGAGGAAAG                         GCTGCAGTAGCTCAAGCAGCACTGGCATACCAGCTCTACCAGAAGAAATTC
genomic: AGTTGCTTGAGAAAATTGGAACTCCAGAGGCCCTTGATCTCCGAGGAAAGgtaataaatt ... tatgttctagGCTGCAGTAGCTCAAGCAGCACTGGCATACCAGCTCTACCAGAAGAAATTC
EST: gi|33405013|gb|CF210640.1|CF210640
EST:     AGTTGCTTGAGAAAATTGGAACTCCAGAGGCCCTTGATCTCCGAGGAAAG                         GCTGCAGTAGCTCCAAGCAGCACTGGCATACCAGCTCTACCAGAAGAAATT
genomic: AGTTGCTTGAGAAAATTGGAACTCCAGAGGCCCTTGATCTCCGAGGAAAGgtaataaatt ... tatgttctagGCTGCAGTAGCT-CAAGCAGCACTGGCATACCAGCTCTACCAGAAGAAATT
EST: gi|33401677|gb|CF207304.1|CF207304
EST:     AGTTGCTTGAGAAAATTGGAACTCCAGAGGCCCTTGATCTCCGAGGAAAG                         GCTGCAGTAGCTCAAGCAGCACTGGCATACCAGCTCTACCAGAAGAAATTC
genomic: AGTTGCTTGAGAAAATTGGAACTCCAGAGGCCCTTGATCTCCGAGGAAAGgtaataaatt ... tatgttctagGCTGCAGTAGCTCAAGCAGCACTGGCATACCAGCTCTACCAGAAGAAATTC
EST: gi|30136217|gb|CB921555.1|CB921555
EST:     AGTTGCTTGAGAAAATTGGAACTCCAGAGGCCCTTGATCTCCGAGGAAAG                         GCTGCAGTAGCTCAAGCAGCACTGGCATACCAGCTCTACCAGAAGAAATTC
genomic: AGTTGCTTGAGAAAATTGGAACTCCAGAGGCCCTTGATCTCCGAGGAAAGgtaataaatt ... tatgttctagGCTGCAGTAGCTCAAGCAGCACTGGCATACCAGCTCTACCAGAAGAAATTC
EST: gi|33401595|gb|CF207222.1|CF207222
EST:     AGTTGCTTGAGAAAATTGGAACTCCAGAGGCCCTTGATCTCCGAGGAAAG                         GCTGCAGTAGCTCAAGCAGCACTGGCATACCAGCTCTACCAGAAGAAATTC
genomic: AGTTGCTTGAGAAAATTGGAACTCCAGAGGCCCTTGATCTCCGAGGAAAGgtaataaatt ... tatgttctagGCTGCAGTAGCTCAAGCAGCACTGGCATACCAGCTCTACCAGAAGAAATTC
EST: gi|30134026|gb|CB919364.1|CB919364
EST:     AGTTGCTTGAGAAAATTGGAACTCCAGAGGCCCTTGATCTCCGAGGAAAG                         GCTGCAGTAGCTCAAGCAGCACTGGCATACCAGCTCTACCAGAAGAAATTC
genomic: AGTTGCTTGAGAAAATTGGAACTCCAGAGGCCCTTGATCTCCGAGGAAAGgtaataaatt ... tatgttctagGCTGCAGTAGCTCAAGCAGCACTGGCATACCAGCTCTACCAGAAGAAATTC
EST: gi|30136612|gb|CB921950.1|CB921950
EST:     AGTTGCTTGAGAAAATTGGAACTCCAGAGGCCCTTGATCTCCGAGGAAAG                         GCTGCAGTAGCTCAAGCAGCACTGGCATACCAGCTCTACCAGAAGAAATTC
genomic: AGTTGCTTGAGAAAATTGGAACTCCAGAGGCCCTTGATCTCCGAGGAAAGgtaataaatt ... tatgttctagGCTGCAGTAGCTCAAGCAGCACTGGCATACCAGCTCTACCAGAAGAAATTC
EST: gi|352795399|gb|FQ476514.1|FQ476514
EST:     GAACTCCAGAGGCCCTTGATCTCCGAGGAAAG                         GCTGCAGTAGCTCAAGCAGCACTGGCATACCAGCTCTACCAGAAGAAATTC
genomic: GAACTCCAGAGGCCCTTGATCTCCGAGGAAAGgtaataaatt ... tatgttctagGCTGCAGTAGCTCAAGCAGCACTGGCATACCAGCTCTACCAGAAGAAATTC
EST: gi|56408961|gb|CX017213.1|CX017213
EST:     AGTTGCTTGAGAAAATTGGAACTCCAGAGGCCCTTGATCTCCGAGGAAAG                         GCTGCAGTAGCTCAAGCAGCACTGGCATACCAGCTCTACCAGAAGAAATTC
genomic: AGTTGCTTGAGAAAATTGGAACTCCAGAGGCCCTTGATCTCCGAGGAAAGgtaataaatt ... tatgttctagGCTGCAGTAGCTCAAGCAGCACTGGCATACCAGCTCTACCAGAAGAAATTC
EST: gi|34319647|gb|CF372401.1|CF372401
EST:     AGTTGCTTGAGAAAATTGGAACTCCAGAGGCCCTTGATCTCCGAGGAAAG                         GCTGCAGTAGCTCAAGCAGCACTGGCATACCAGCTCTACCAGAAGAAATTC
genomic: AGTTGCTTGAGAAAATTGGAACTCCAGAGGCCCTTGATCTCCGAGGAAAGgtaataaatt ... tatgttctagGCTGCAGTAGCTCAAGCAGCACTGGCATACCAGCTCTACCAGAAGAAATTC
EST: gi|110688023|gb|EE066103.1|EE066103
EST:     AGTTGCTTGAGAAAATTGGAACTCCAGAGGCCCTTGATCTCCGAGGAAAG                         GCTGCAGTAGCTCAAGCAGCACTGGCATACCAGCTCTACCAGAAGAAATTC
genomic: AGTTGCTTGAGAAAATTGGAACTCCAGAGGCCCTTGATCTCCGAGGAAAGgtaataaatt ... tatgttctagGCTGCAGTAGCTCAAGCAGCACTGGCATACCAGCTCTACCAGAAGAAATTC
EST: gi|37188142|gb|CF607493.1|CF607493
EST:     AGTTGCTTGAGAAAATTGGAACTCCAGAGGCCCTTGATCTCCGAGGAAAG                         GCTGCAGTAGCTCAAGCAGCACTGGCATACCAGCTCTACCAGAAGAAATTC
genomic: AGTTGCTTGAGAAAATTGGAACTCCAGAGGCCCTTGATCTCCGAGGAAAGgtaataaatt ... tatgttctagGCTGCAGTAGCTCAAGCAGCACTGGCATACCAGCTCTACCAGAAGAAATTC
EST: gi|110425862|gb|EC992257.1|EC992257
EST:     AGTTGCTTGAGAAAATTGGAACTCCAGAGGCCCTTGATCTCCGAGGAAAG                         GCTGCAGTAGCTCAAGCAGCACTGGCATACCAGCTCTACCAGAAGAAATTC
genomic: AGTTGCTTGAGAAAATTGGAACTCCAGAGGCCCTTGATCTCCGAGGAAAGgtaataaatt ... tatgttctagGCTGCAGTAGCTCAAGCAGCACTGGCATACCAGCTCTACCAGAAGAAATTC
EST: gi|110700272|gb|EE078124.1|EE078124
EST:     AGTTGCTTGAGAAAATTGGAACTCCAGAGGCCCTTGATCTCCGAGGAAAG                         GCTGCAGTAGCTCAAGCAGCACTGGCATACCAGCTCTACCAGAAGAAATTC
genomic: AGTTGCTTGAGAAAATTGGAACTCCAGAGGCCCTTGATCTCCGAGGAAAGgtaataaatt ... tatgttctagGCTGCAGTAGCTCAAGCAGCACTGGCATACCAGCTCTACCAGAAGAAATTC
EST: gi|56409703|gb|CX017955.1|CX017955
EST:     AGTTGCTTGAGAAAATTGGAACTCCAGAGGCCCTTGATCTCCGAGGAAAG                         GCTGCAGTAGCTCAAGCAGCACTGGCATACCAGCTCTACCAGAAGAAATTC
genomic: AGTTGCTTGAGAAAATTGGAACTCCAGAGGCCCTTGATCTCCGAGGAAAGgtaataaatt ... tatgttctagGCTGCAGTAGCTCAAGCAGCACTGGCATACCAGCTCTACCAGAAGAAATTC
EST: gi|30297221|gb|CB974015.1|CB974015
EST:     AGTTGCTTGAGAAAATTGGAACTCCAGAGGCCCTTGATCTCCGAGGAAAG                         GCTGCAGTAGCTCAAGCAGCACTGGCATACCAGCTCTACCAGAAGAAATTC
genomic: AGTTGCTTGAGAAAATTGGAACTCCAGAGGCCCTTGATCTCCGAGGAAAGgtaataaatt ... tatgttctagGCTGCAGTAGCTCAAGCAGCACTGGCATACCAGCTCTACCAGAAGAAATTC
EST: gi|110362382|gb|EC925912.1|EC925912
EST:     AGTTGCTTGAGAAAATTGGAACTCCAGAGGCCCTTGATCTCCGAGGAAAG                         GCTGCAGTAGCTCAAGCAGCACTGGCATACCAGCTCTACCAGAAGAAATTC
genomic: AGTTGCTTGAGAAAATTGGAACTCCAGAGGCCCTTGATCTCCGAGGAAAGgtaataaatt ... tatgttctagGCTGCAGTAGCTCAAGCAGCACTGGCATACCAGCTCTACCAGAAGAAATTC
EST: gi|222357010|gb|GH717872.1|GH717872
EST:     AGTTGCTTGAGAAAATTGGAACTCCAGAGGCCCTTGATCTCCGAGGAAAG                         GCTGCAGTAGCTCAAGCAGCACTGGCATACCAGCTCTACCAGAAGAAATTC
genomic: AGTTGCTTGAGAAAATTGGAACTCCAGAGGCCCTTGATCTCCGAGGAAAGgtaataaatt ... tatgttctagGCTGCAGTAGCTCAAGCAGCACTGGCATACCAGCTCTACCAGAAGAAATTC
EST: gi|34319381|gb|CF372135.1|CF372135
EST:     AGTTGCTTGAGAAAATTGGAACTCCAGAGGCCCTTGATCTCCGAGGAAAG                         GCTGCAGTAGCTCAAGCAGCACTGGCATACCAGCTCTACCAGAAGAAATTC
genomic: AGTTGCTTGAGAAAATTGGAACTCCAGAGGCCCTTGATCTCCGAGGAAAGgtaataaatt ... tatgttctagGCTGCAGTAGCTCAAGCAGCACTGGCATACCAGCTCTACCAGAAGAAATTC
EST: gi|110722800|gb|EE099382.1|EE099382
EST:     AGTTGCTTGAGAAAATTGGAACTCCAGAGGCCCTTGATCTCCGAGGAAAG                         GCTGCAGTAGCTCAAGCAGCACTGGCATACCAGCTCTACCAGAAGAAATTC
genomic: AGTTGCTTGAGAAAATTGGAACTCCAGAGGCCCTTGATCTCCGAGGAAAGgtaataaatt ... tatgttctagGCTGCAGTAGCTCAAGCAGCACTGGCATACCAGCTCTACCAGAAGAAATTC
EST: gi|56409588|gb|CX017840.1|CX017840
EST:     AGTTGCTTGAGAAAATTGGAACTCCAGAGGCCCTTGATCTCCGAGGAAAG                         GCTGCAGTAGCTCAAGCAGCACTGGCATACCAGCTCTACCAGAAGAAATTC
genomic: AGTTGCTTGAGAAAATTGGAACTCCAGAGGCCCTTGATCTCCGAGGAAAGgtaataaatt ... tatgttctagGCTGCAGTAGCTCAAGCAGCACTGGCATACCAGCTCTACCAGAAGAAATTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttttgagggtttaaaactcaggacctaatatcatgggacttttatatgttctagGCTGCAGTAGCTCAAGCAGCACTGGCATACCAGCTCTACCAGAAGAAATTCTCTGGGCCTAGATGGGAAGCTCTGGTGAAGAAAGGTGCCAAGAAACAGA
                       acctaat  putative branch site (score: 3)
                                       cttttat  putative PPT
                                        ttttatatgttcta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaataaattaatttacaatcaaattgtcatccttttgagggtttaaaactcaggacctaatatcatgggacttttatatgttctagGCTGCAGTAGCTCAAGCAGCACTGGCATACCAGCTCTACCAGAAGAAATTCTCTGGGCCTAGATGGGAAGCTCTGGTGAAGAAAGGTGCCAAGAAACAGA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAA