Sequence
atgc intronic sequence ATGC exonic sequencegtacagagcaatgcctctcttctgttaacattagtgatatccaagtaatatattcacagtgaagaactgatatacatagtgcccttgcacagGTTCTGAAAGAACTTGATCGTCCAATTATGTATTCTCTTTCTCCTGGAACCAGGGTGACACCTGCAATGGCCAAAGAAGTAAATGGACTAGTCAACATGT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0137g00630.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA08G13960.1 (Glycine max), 3'ss of exon 5
--------------------------gtacagagcaatgcctctc-ttctgttaacattagtgatatccaagtaatatattcacagtgaagaactga------tat-acatagtgcccttgcacagGTTCTGAAAGAACTTGATCGTCCAATTATGTATTCTCTTTCTCCTGGAACCAGGGTGACACCTGCAATGGCCAAAGAAGTAAATGGACTAGTCAACATGT
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gtattctacagttccctctccctcttaccctcgtctctacctctcattctcacataaacactgagatt--ggtaatattttgccaatgatttattggctaacttatcatatgacatgtcatgacagGTTCTCAGTGTGCTTAATCGCCCTATTGTGTATTCTCTGTCTCCTGGAACCAGTGTGACACCAGCCATGGCCAAGGATGTCAGTGGACTAGTCAACATGT
upper sequence: Vv01s0137g00630.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA11G37760.1 (Glycine max), 3'ss of exon 5
-------gta-cagagcaatgcctctcttctgttaacattag--tgatatccaag--taata-tattcacagtgaagaactgatatacatagtgcccttgcacagGTTCTGAAAGAACTTGATCGTCCAATTATGTATTCTCTTTCTCCTGGAACCAGGGTGACACCTGCAATGGCCAAAGAAGTAAATGGACTAGTCAACATGT
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gtattctgcagttgtccttttcctccctcccttttactctcatatgaaaaccaagattggcaatatttaaatccattggaaactaccaatgacatgtcattgtagGTTCTCAAGGAGTTTGATCGCCCCATTGTATATTCTTTGTCTCCTGGAACCAGTGCGACACCAGCAATGGCCAAGGATGTCAGTGGACTGGTCAATATGT
upper sequence: Vv01s0137g00630.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA11G37760.3 (Glycine max), 3'ss of exon 4
-------gta-cagagcaatgcctctcttctgttaacattag--tgatatccaag--taata-tattcacagtgaagaactgatatacatagtgcccttgcacagGTTCTGAAAGAACTTGATCGTCCAATTATGTATTCTCTTTCTCCTGGAACCAGGGTGACACCTGCAATGGCCAAAGAAGTAAATGGACTAGTCAACATGT---------
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gtattctgcagttgtccttttcctccctcccttttactctcatatgaaaaccaagattggcaatatttaaatccattggaaactaccaatgacatgtcattgtaggttctcaagGAGTTTGATCGCCCCATTGTATATTCTTTGTCTCCTGGAACCAGTGCGACACCAGCAATGGCCAAGGATGTCAGTGGACTGGTCAATATGTATCGTATAA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tatccaagtaatatattcacagtgaagaactgatatacatagtgcccttgcacagGTTCTGAAAGAACTTGATCGTCCAATTATGTATTCTCTTTCTCCTGGAACCAGGGTGACACCTGCAATGGCCAAAGAAGTAAATGGACTAGTCAACATGT
aactgat putative branch site (score: 3)
tgccctt putative PPT
aagtaatatattca TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtacagagcaatgcctctcttctgttaacattagtgatatccaagtaatatattcacagtgaagaactgatatacatagtgcccttgcacagGTTCTGAAAGAACTTGATCGTCCAATTATGTATTCTCTTTCTCCTGGAACCAGGGTGACACCTGCAATGGCCAAAGAAGTAAATGGACTAGTCAACATGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT