1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtacttctaaacataaattcattttttgttactattagtccatgaaagaccctttatgattgaaaccattgttctttacactcgtttattatctttctttattgccccttaatttatgacgggatctgttttttacagGTTAAAACTATATTTATCCCAACCGGGGCCACTTTTACCTCAGAAATTTGTTCTCCACTAGTTGCCACCCTTCCCTTGGAG
species | Vitis vinifera |
transcript | Vv01s0127g00260.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TAAGCTTTTCCGAATGTGGAGGTATTGAAATTGAAGAGAACTGGGATAAG GTTAAAACTATATTTATCCCAACCGGGGCCCACTTT-ACCTCAGAAATTTGEST: gi|110730830|gb|EE108354.1|EE108354
genomic: TAAGCTTTTCCGAATGTGGAGGTATTGAAATTGAAGAGAACTGGGATAAGgtacttctaa ... ttttttacagGTTAAAACTATATTTATCCCAACCGGGGCC-ACTTTTACCTCAGAAATTTG
EST: TAAGCTTTTCTGAATGTGGAGGTATTGAAATTGAAGAGAACTGGGATAAG GTTAAAACTATATTTATCCCAACCGGGGCCACTTTTACCTCAGAAATTTGTEST: gi|294966134|gb|GW837501.1|GW837501
genomic: TAAGCTTTTCCGAATGTGGAGGTATTGAAATTGAAGAGAACTGGGATAAGgtacttctaa ... ttttttacagGTTAAAACTATATTTATCCCAACCGGGGCCACTTTTACCTCAGAAATTTGT
EST: TAAGCTTTTCCGAATGTGGAGGTATTGAAATTGAAGAGAACTGGGATAAG GTTAAAACTATATTTATCCCAAACGGTGCCACTTTEST: gi|71860189|gb|DT009244.1|DT009244
genomic: TAAGCTTTTCCGAATGTGGAGGTATTGAAATTGAAGAGAACTGGGATAAGgtacttctaa ... ttttttacagGTTAAAACTATATTTATCCCAACCGGGGCCACTTT
EST: TAAGCTTTTCCGAATGTGGAGGTATTGAAATTGAAGAGAACTGGGATAAG GTTAAAACTATATTTATCCCAACCGGEST: gi|110731355|gb|EE105692.1|EE105692
genomic: TAAGCTTTTCCGAATGTGGAGGTATTGAAATTGAAGAGAACTGGGATAAGgtacttctaa ... ttttttacagGTTAAAACTATATTTATCCCAACCGG
EST: TAAGCTTTTCCGAATGTGGAGGTATTGAAATTGAAGAGAACTGGGATAAG GTTAAAACTATATTTATCCCAACCGGGGCCACTTTTACCTCAGAAATTTGTEST: gi|110730143|gb|EE106883.1|EE106883
genomic: TAAGCTTTTCCGAATGTGGAGGTATTGAAATTGAAGAGAACTGGGATAAGgtacttctaa ... ttttttacagGTTAAAACTATATTTATCCCAACCGGGGCCACTTTTACCTCAGAAATTTGT
EST: TAAGCTTTTCCGAATGTGGAGGTATTGAAATTGAAGAGAACTGGGATAAG GTTAAAACTATATTTATCCCAACCGGGGCCACTTTTACCTCAGAAATTTGTEST: gi|111125102|gb|EE253720.1|EE253720
genomic: TAAGCTTTTCCGAATGTGGAGGTATTGAAATTGAAGAGAACTGGGATAAGgtacttctaa ... ttttttacagGTTAAAACTATATTTATCCCAACCGGGGCCACTTTTACCTCAGAAATTTGT
EST: TAAGCTTTTCCGAATGTGGAGGTATTGAAATTGAAGAGAACTGGGATAAG GTTAAAACTATATTTATCCCAACCGGGGCCACTTTTACCTCAGAAATTTGTEST: gi|294965669|gb|GW837268.1|GW837268
genomic: TAAGCTTTTCCGAATGTGGAGGTATTGAAATTGAAGAGAACTGGGATAAGgtacttctaa ... ttttttacagGTTAAAACTATATTTATCCCAACCGGGGCCACTTTTACCTCAGAAATTTGT
EST: TAAGCTTTTCCGAATGTGGAGGTATTGAAATTGAAGAGAACTGGGATAAG GTTAAAACTATATTTATCCCAACCGGGGGCCACTTTTACCTCAGAAATTTGEST: gi|71863321|gb|DT012376.1|DT012376
genomic: TAAGCTTTTCCGAATGTGGAGGTATTGAAATTGAAGAGAACTGGGATAAGgtacttctaa ... ttttttacagGTTAAAACTATATTTATCCCAACCGGGG-CCACTTTTACCTCAGAAATTTG
EST: TAAGCTTTTCCGAATGTGGAGGTATTGAAATTGAAGAGAACTGGGATAAG GTTAAAACTATATTTATCCCAACCGGGGCCGCTTTTACCTCAGAAATTTGTEST: gi|161718453|gb|FC065040.1|FC065040
genomic: TAAGCTTTTCCGAATGTGGAGGTATTGAAATTGAAGAGAACTGGGATAAGgtacttctaa ... ttttttacagGTTAAAACTATATTTATCCCAACCGGGGCCACTTTTACCTCAGAAATTTGT
EST: TAAGCTTTTCCGAATGTGGAGGTATTGAAATTGAAGAGAACTGGGATAAG GTTAAAACTATATTTATCCCAACCGGGGCCACTTTTACCTCAGAAATTTGTEST: gi|161714091|gb|FC064386.1|FC064386
genomic: TAAGCTTTTCCGAATGTGGAGGTATTGAAATTGAAGAGAACTGGGATAAGgtacttctaa ... ttttttacagGTTAAAACTATATTTATCCCAACCGGGGCCACTTTTACCTCAGAAATTTGT
EST: TAAGCTTTTCCGAATGTGGAGGTATTGAAATTGAAGAGAACTGGGATAAG GTTAAAACTATATTTATCCCAACCGGGGCCACTTTTACCTCAGAAATATGT
genomic: TAAGCTTTTCCGAATGTGGAGGTATTGAAATTGAAGAGAACTGGGATAAGgtacttctaa ... ttttttacagGTTAAAACTATATTTATCCCAACCGGGGCCACTTTTACCTCAGAAATTTGT
gtttattatctttctttattgccccttaatttatgacgggatctgttttttacagGTTAAAACTATATTTATCCCAACCGGGGCCACTTTTACCTCAGAAATTTGTTCTCCACTAGTTGCCACCCTTCCCTTGGAG
ccttaat putative branch site (score: 4)
tctgtttttt putative PPT
ttatctttctttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacttctaaacataaattcattttttgttactattagtccatgaaagaccctttatgattgaaaccattgttctttacactcgtttattatctttctttattgccccttaatttatgacgggatctgttttttacagGTTAAAACTATATTTATCCCAACCGGGGCCACTTTTACCTCAGAAATTTGTTCTCCACTAGTTGCCACCCTTCCCTTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG