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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtggaatcattttttagcttctttcctttcccttcctttcccttcatttcaggaaaataagagtgattttattaatatatacagACTGATGCATATCAAGCCACTGGATGCTACAATCTGCTATGCTCAGGCTTTGTTCAGACCAACAATAGGATTGCAATTGGGGCTGCCATCTCTCCAACCT

Basic information

species Vitis vinifera
transcript Vv01s0127g00010.t01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0127g00010.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA02G04240.1 (Glycine max), 3'ss of exon 9
--gtaagtggaatcattttttagcttctttcctttcccttcctttcccttcatttcaggaaaa--------taagagtgatt--ttattaatatatacagACTGATGCATATCAAGCCACTGGATGCTACAATCTGCTATGCTCAGGCTTTGTTCAGACCAACAATAGGATTGCAATTGGGGCTGCCATCTCTCCAACCT
    |||   ||| ||  |    ||   ||    |    |  ||   |||  || ||   |||        | | | | |||  | |||| ||| | |||| ||||||||||||||| |||||||| |||||| | |||||||||||||||||||| || || ||||| ||||||||||| ||||| ||||||||||| |
atagaagaaaaattataataagactaaatttacatataattattgttcttgtttacaaagaaagaaactaatgaaaattattactaattattatttgcagAGTGATGCATATCAAGCAACTGGATGTTACAATTTACTATGCTCAGGCTTTGTTCAAACGAATAATAGAATTGCAATTGGAGCTGCAATCTCTCCAACTT

upper sequence: Vv01s0127g00010.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA01G03390.1 (Glycine max), 3'ss of exon 6
-------gtaagtggaatcattttttagcttctttcctttcccttcctttcccttcatttcaggaaaataagagtgatt-----ttattaatatatacagACTGATGCATATCAAGCCACTGGATGCTACAATCTGCTATGCTCAGGCTTTGTTCAGACCAACAATAGGATTGCAATTGGGGCTGCCATCTCTCCAACCT
         || |  ||| | |          ||   | |   |    ||    | |    | |||| |||     |||     | |||| ||| | |||| ||||||||||||||| ||||||||||||||  | || || |||||||||||||| || |||||||| ||||||||||| ||||| ||||||||||| |
cattgttcaaactacaataactaaaactacagttaggtattattattgttgttgttaaagaaagaaactaatgaaaattaccactaattattatttgcagAGTGATGCATATCAAGCAACTGGATGCTACAACTTACTGTGTTCAGGCTTTGTTCAAACTAACAATAGAATTGCAATTGGAGCTGCAATCTCTCCAACTT

upper sequence: Vv01s0127g00010.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA18G20700.1 (Glycine max), 3'ss of exon 6
-------------------------------------------------------------------gtaagtggaatcattttttagcttctttcctttcccttcctttcccttcatttcaggaaaataagagtgatt-ttattaatatatacagACTGATGCATATCAAGCCACTGGATGCTACAATCTGCTATGCTCAGGCTTTGTTCAGACCAACAATAGGATTGCAATTGGGGCTGCCATCTCTCCAACCT
                                                                       ||   ||   |  | |      ||   |||     |  |   |  | |  | ||  |||  | | ||  || | ||||| | |||||||||||||||||||| ||||| || |||||| | || ||||||||||||||||| || |||| ||  ||||||||||| || || ||||||||||| |
gtaagtaaatttattgaaggaaaggaggtggaaaagtatactatatacgtataattatttctgcttcaagggtaagatacctagtaaaaaaagttttattcaaaagcactaattataata-atgatgatattaataataattgtcaatatttgcagACTGATGCATATCAAGCAACTGGGTGTTACAATTTACTCTGCTCAGGCTTTGTTCAAACAAACAGTAAAATTGCAATTGGAGCAGCAATCTCTCCAACTT

upper sequence: Vv01s0127g00010.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: EFJ30203 (Selaginella moellendorffii), 3'ss of exon 5
gtaagtggaatcattttttagcttctttcctttcccttcctttcccttcatttcaggaaaataagagtgattttattaatatatacagACTGATGCATATCAAGCCACTGGATGCTACAATCTGCTATGCTCAGGCTTTGTTCAGACCAACAATAGGATTGCAATTGGGGCTGCCATCTCTCCAACCT
                  |   ||       | |  ||  ||||| | |   |||  | | |  ||  | ||             ||||  |||||||||| | ||||||| |||||||| ||||| |||||||||||  | ||   |   |  || ||||| ||||| ||| | || || ||    |
-----------------gtgagtttgaaatctccagtttgtttccgtgc---tcaatatactgtgatcgtttc------------cagAGCGATGCATATCGAACCACTGGCTGCTACAACCTGCTGTGCTCAGGCTTCATACAACTCGGGAGGAGTATTGCCATTGGTGCTACAATATCCCCCTTGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cccttcctttcccttcatttcaggaaaataagagtgattttattaatatatacagACTGATGCATATCAAGCCACTGGATGCTACAATCTGCTATGCTCAGGCTTTGTTCAGACCAACAATAGGATTGCAATTGGGGCTGCCATCTCTCCAACCT
                                        tattaat  putative branch site (score: 2)
                        aaaataagagtgattt  TA-rich tract