Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcttggaaggttgagaattccccaggttttaagacttcattttgcagcaaatggtggaggctaaaattatgaaatggataggcaccaaggttgttgatggttcttgtttctgtgattgcagGCTGGTCCAAGGATATGCCTTGGGAAGGACTCGGCATATCTCCAAATGAAGATGGCAATAGCTTTATTGTGTAGGTTTTTCAAATTCAATTTAGTACAAG

Basic information

species Vitis vinifera
transcript Vv01s0026g02700.t01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0026g02700.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA07G04840.1 (Glycine max), 3'ss of exon 5
gtatgcttggaaggttgagaattccccaggttttaagacttcattttgcagcaaatggtggaggctaaaattatgaaatg-gataggcaccaaggttgttgatggttcttgtttctgtgattgcagGCTGGTCCAAGGATATGCCTTGGGAAGGACTCGGCATATCTCCAAATGAAGATGGCAATAGCTTTATTGTGTAGGTTTTTCAAATTCAATTTAGTACAAG
||| | |       ||  ||||   | |   | || ||   || |    |||   |  ||   | |  ||  | ||  ||  | |  ||||   ||| |  ||  || |  |||   |  ||  |||| || ||||||||||||||||| |||||||| |||||||| || |||| |||||   ||||| | ||||  || |||| ||||||||| || || | ||
gtaagttcatctcttttggaat---ctataatctatgataacaatcctaagctggtaatgtgagtttgaaccaagatgtgcaacaaacaccttagtttt--attattttcctttggat--ttatagGCAGGACCAAGGATATGCCTTGGCAAGGACTCTGCATATCTTCAGATGAGGATGGTGCTAGCTATTTTGTTCAGATTTTACAAATTCAACTTGGTGCCAG

upper sequence: Vv01s0026g02700.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: AT1G69500.1 (Arabidopsis thaliana), 3'ss of exon 5
gtatgcttggaaggttgagaattccccaggttttaagacttcattttgcagcaaatggtggaggctaaaattatgaaatggataggcaccaaggttgttgatggttcttgtttctgtgattgcagGCTGGTCCAAGGATATGCCTTGGGAAGGACTCGGCATATCTCCAAATGAAGATGGCAATAGCTTTATTGTGTAGGTTTTTCAAATTCAATTTAGTACAAG
                                             |  |   ||            || ||| |    |   |   ||  || | || |||        |||| ||||| || ||||||| |||||||||||  | || ||||| || || ||||| ||||||||||||||||| ||  || | || || || |  || ||  |||| || | | 
--------------------------------------------gtaactataatcaaacacatacaagatttttgtttt--tgaacatgaaagatgatga--------gtttgtgtgagtgtagGCTGGACCAAGGATATGTTTGGGAAAGGATTCAGCTTATCTGCAAATGAAGATGGCAATGGCAATACTTTGCAGATTCTATAAGTTTCATTTGGTGCCAA

upper sequence: Vv01s0026g02700.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: PP1S68_170V6.1 (Physcomitrella patens), 3'ss of exon 6
-----gtatgcttggaa-ggttgagaattccccaggttttaagacttcattttgcagcaaatggtggaggctaaaattatgaaatggatagg--caccaaggttgttgatggttcttgtt-tctgtgattg-cagGCTGGTCCAAGGATATGCCTTGGGAAGGACTCGGCATATCTCCAAATGAAGATGGCAATAGCTTTATTGTGTAGGTTTTTCAAATTCAATTTAGTACAAG
     |||  |||     | ||      |   ||     | |  | |   ||     |         |     ||    |  |  | | |||  |||  |           |||  || | | ||  ||    ||||||| ||  |||| ||||| ||||| ||||| |||||||| |||||||||||||  |  ||  | |||||| | || ||||||||  ||||  | | ||
gttcagtaatcttaccttgattttccccttatcacaacctgaaccgttggttgaattcttccttccaaaatctaatccctcgacggtaaaggtccactgaatccaccagctgtttgtgatgtttgaaatcaatagGCTGGCCCCCGGATCTGCCTAGGGAAAGACTCAGCATATCTTCAAATGAAGATGGTTACTGCACTGTTGTGTCGATTCTTCAAATTTGATTTGATGCCAG

upper sequence: Vv01s0026g02700.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: PP1S69_66V6.1 (Physcomitrella patens), 3'ss of exon 6
-------------gtatgcttggaaggttgaga-att--ccccaggttttaagacttcattttgcagcaaatggtggaggctaaaattatgaaatgga--taggcaccaaggttgttgatggttcttgtttctgtgattgcagGCTGGTCCAAGGATATGCCTTGGGAAGGACTCGGCATATCTCCAAATGAAGATGGCAATAGCTTTATTGTGTAGGTTTTTCAAATTCAATTTAGTACAAG
                 |||    || || | | | |         | ||||  | |   |    | |  |   |         | || || | || |  ||  | |     || | | ||| | ||   |   |     |||||||| ||  |||| ||||| ||||||||||||||||| || ||||||||||||||    ||  | |||||  |||||||||| ||  | || |  |  |
gtcttcacttaattctcgctccccagattcacacactgatgtagaatcttaattcatgtctgcataacgcaacctcttcatggtagttgtgtattgaagttaaacgcttgtattttcggtggatgtttgcttcat-----cagGCTGGCCCTCGGATCTGCCTGGGGAAGGACTCGGCATACCTGCAAATGAAGATGGCTTCTGCACTTTTGTGCCGGTTTTTCAAGTTTGAATTGGCGCCGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttatgaaatggataggcaccaaggttgttgatggttcttgtttctgtgattgcagGCTGGTCCAAGGATATGCCTTGGGAAGGACTCGGCATATCTCCAAATGAAGATGGCAATAGCTTTATTGTGTAGGTTTTTCAAATTCAATTTAGTACAAG
                         tgttgat  putative branch site (score: 4)
                                        tttctgt  putative PPT