1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtttaaaatattttctaaacactctacttttgctttatgtggatcaaagtttctgtttgctttttgcgtgaagtaactaactatgatcctctacacctgaaatgtagAGAGATGTTCATATCATCACTGCTTAGGTTCAACTTTTATGCCCAAGCTTCAAGGAAAGTTTTTGGCAACAGAAAATTTCTTTTATACATCAAAG
species | Vitis vinifera |
transcript | Vv01s0026g02490.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTTCTCAGAATGTCGAGCTGCTGCATTAACCTTGTTACAGAAGGGAAAAG AGAGATGTTCATATCATCACTGCTTAGGTTCGACTTTTATGCCCAAGCTTCEST: gi|110356657|gb|EC919644.1|EC919644
genomic: CTTCTCAGAGTGTCGAGCTGCTGCATTAACCTTGTTACAGAAGGGAAAAGgtttaaaata ... tgaaatgtagAGAGATGTTCATATCATCACTGCTTAGGTTCAACTTTTATGCCCAAGCTTC
EST: CTTCTCAGAATGTCGAGCTGCTGCATTAACCTTGTTACAGAAGGGAAAAG AGAGATGTTCATATCATCACTGCTTAGGTTCGACTTTTATGCCCAAGCTTCEST: gi|30320456|gb|CD003718.1|CD003718
genomic: CTTCTCAGAGTGTCGAGCTGCTGCATTAACCTTGTTACAGAAGGGAAAAGgtttaaaata ... tgaaatgtagAGAGATGTTCATATCATCACTGCTTAGGTTCAACTTTTATGCCCAAGCTTC
EST: TTACAGAAGGGAAAAG AGAGATGTTCATATCATCACTGCTTAGGTTCAACTTTTATGCCCAAGCTTCEST: gi|110359018|gb|EC919806.1|EC919806
genomic: TTACAGAAGGGAAAAGgtttaaaata ... tgaaatgtagAGAGATGTTCATATCATCACTGCTTAGGTTCAACTTTTATGCCCAAGCTTC
EST: CTTCTCAGAATGTCGAGCTGCTGCATTAACCTTGTTACAGAAGGGAAAAG AGAGATGTTCATATCATCACTGCTTAGGTTCGACTTTTATGCCCAAGCTTCEST: gi|110357251|gb|EC920660.1|EC920660
genomic: CTTCTCAGAGTGTCGAGCTGCTGCATTAACCTTGTTACAGAAGGGAAAAGgtttaaaata ... tgaaatgtagAGAGATGTTCATATCATCACTGCTTAGGTTCAACTTTTATGCCCAAGCTTC
EST: CTTCTCAGAATGTCGAGCTGCTGCATTAACCTTGTTACAGAAGGGAAAAG AGAGATGTTCATATCATCACTGCTTAGGTTCGACTTTTATGCCCAAGCTTCEST: gi|110383715|gb|EC948106.1|EC948106
genomic: CTTCTCAGAGTGTCGAGCTGCTGCATTAACCTTGTTACAGAAGGGAAAAGgtttaaaata ... tgaaatgtagAGAGATGTTCATATCATCACTGCTTAGGTTCAACTTTTATGCCCAAGCTTC
EST: CTTCTCAGAATGTCGAGCTGCTGCATTAACCTTGTTACAGAAGGGAAAAG AGAGATGTTCATATCATCACTGCTTAGGTTCGACTTTTATGCCCAAGCTTC
genomic: CTTCTCAGAGTGTCGAGCTGCTGCATTAACCTTGTTACAGAAGGGAAAAGgtttaaaata ... tgaaatgtagAGAGATGTTCATATCATCACTGCTTAGGTTCAACTTTTATGCCCAAGCTTC
ctgtttgctttttgcgtgaagtaactaactatgatcctctacacctgaaatgtagAGAGATGTTCATATCATCACTGCTTAGGTTCAACTTTTATGCCCAAGCTTCAAGGAAAGTTTTTGGCAACAGAAAATTTCTTTTATACATCAAAG
aactaac putative branch site (score: 1)
taactaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttaaaatattttctaaacactctacttttgctttatgtggatcaaagtttctgtttgctttttgcgtgaagtaactaactatgatcctctacacctgaaatgtagAGAGATGTTCATATCATCACTGCTTAGGTTCAACTTTTATGCCCAAGCTTCAAGGAAAGTTTTTGGCAACAGAAAATTTCTTTTATACATCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA