1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tttataatcagtattactgctgcttatttgttgttaaattctttaagtgacatcacagtaaagtttcatcttaaatggttgttttgcatctgatgcacagCCTTACCAACCGGGCTACACTGCTCCTCCCCCACCACCTCATCCTGAAGATACTGCTATTGATATTGG
species | Vitis vinifera |
transcript | Vv01s0026g02470.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AACGATGGTGCAATGAGAAAGGAGACATAATTTGTGAGATCTGCCATCAG CCTTACCAACCGGGCTACACTGCTCCTCCCCCACCACCTCATCCTGAAGATEST: gi|110685836|gb|EE062903.1|EE062903
genomic: AACGATGGTGCAATGAGAAAGGAGACATAATTTGTGAGATCTGCCATCAGgtatactcgt ... tgatgcacagCCTTACCAACCGGGCTACACTGCTCCTCCCCCACCACCTCATCCTGAAGAT
EST: AACGATGGTGCAATGAGAAAGGAGACATAATTTGTGAGATCTGCCATCAG CCTTACCAACCGGGCTACACTGCTCCTCCCCCACCACCTCATCCTGAAGATEST: gi|110689841|gb|EE066416.1|EE066416
genomic: AACGATGGTGCAATGAGAAAGGAGACATAATTTGTGAGATCTGCCATCAGgtatactcgt ... tgatgcacagCCTTACCAACCGGGCTACACTGCTCCTCCCCCACCACCTCATCCTGAAGAT
EST: AACGATGGTGCAATGAGAAAGGAGACATAATTTGTGAGATCTGCCATCAG CCTTACCAACCGGGCTACACTGCTCCTCCCCCACCACCTCATCCTGAAGATEST: gi|110713173|gb|EE088860.1|EE088860
genomic: AACGATGGTGCAATGAGAAAGGAGACATAATTTGTGAGATCTGCCATCAGgtatactcgt ... tgatgcacagCCTTACCAACCGGGCTACACTGCTCCTCCCCCACCACCTCATCCTGAAGAT
EST: AACGATGGTGCAATGAGAAAGGAGACATAATTTGTGAGATCTGCCATCAG CCTTACCAACCGGGCTACACTGCTCCTCCCCCACCACCTCATCCTGAAGATEST: gi|30298557|gb|CB975351.1|CB975351
genomic: AACGATGGTGCAATGAGAAAGGAGACATAATTTGTGAGATCTGCCATCAGgtatactcgt ... tgatgcacagCCTTACCAACCGGGCTACACTGCTCCTCCCCCACCACCTCATCCTGAAGAT
EST: AACGATGGTGCAATGAGAAAGGAGACATAATTTGTGAGATCTGCCATCAG CCTTACCAACCAGGCTACACTGCTCCTCCCCCACCACCTCATTCGGAAGATEST: gi|110715491|gb|EE093604.1|EE093604
genomic: AACGATGGTGCAATGAGAAAGGAGACATAATTTGTGAGATCTGCCATCAGgtatactcgt ... tgatgcacagCCTTACCAACCGGGCTACACTGCTCCTCCCCCACCACCTCATCCTGAAGAT
EST: AACGATGGTGCAATGAGAAAGGAGACGTAATTTGTGAGATCTGCCATCAG CCTTACCAACCGGGCTACACTGCTCCTCCCCCACCACCTCATTCTGAAGAT
genomic: AACGATGGTGCAATGAGAAAGGAGACATAATTTGTGAGATCTGCCATCAGgtatactcgt ... tgatgcacagCCTTACCAACCGGGCTACACTGCTCCTCCCCCACCACCTCATCCTGAAGAT
agtgacatcacagtaaagtttcatcttaaatggttgttttgcatctgatgcacagCCTTACCAACCGGGCTACACTGCTCCTCCCCCACCACCTCATCCTGAAGATACTGCTATTGATATTGG
atctgat putative branch site (score: 4)
atcttaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttataatcagtattactgctgcttatttgttgttaaattctttaagtgacatcacagtaaagtttcatcttaaatggttgttttgcatctgatgcacagCCTTACCAACCGGGCTACACTGCTCCTCCCCCACCACCTCATCCTGAAGATACTGCTATTGATATTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - -actgctg
- - - - - - - - - - - - - - - - - - - - - - - - - catcaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttttgca