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gtaaacttgttaagatggtccaaatgcattccaccacttctttttatgtctgtctgctaaactaaaattttattgtttatagGGCCCAGCTCGTGCTCTTCTAGCTGATCTATCAG
species | Vitis vinifera |
transcript | Vv01s0026g01960.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTTTTGTCCTTGGATTTTGGATGCTAGATCTTGGAAACAATACGGTGCAG GGCCCAGCTCGTGEST: gi|110698594|gb|EE076268.1|EE076268
genomic: TTTTTGTCCTTGGATTTTGGATGCTAGATCTTGCAAACAATACGGTGCAGgtaaacttgt ... ttgtttatagGGCCCAGCTCGTG
EST: TTTTTGTCCTTGGATTTTGGATGCTAGATCTTGCAAACAATACGGTGCAG GGCCCAGCTCGTGCTCTTCTAGCTGATCTATCAGEST: gi|352776811|gb|FQ472698.1|FQ472698
genomic: TTTTTGTCCTTGGATTTTGGATGCTAGATCTTGCAAACAATACGGTGCAGgtaaacttgt ... ttgtttatagGGCCCAGCTCGTGCTCTTCTAGCTGATCTATCAG
EST: TTTTTGTCCTTGGATTTTGGATGCTAGATCTTGCAAACAATACGGTGCAG GGCCCAGCTCGTGCTCTTCTAGCTGATCTATCAGEST: gi|110723267|gb|EE100385.1|EE100385
genomic: TTTTTGTCCTTGGATTTTGGATGCTAGATCTTGCAAACAATACGGTGCAGgtaaacttgt ... ttgtttatagGGCCCAGCTCGTGCTCTTCTAGCTGATCTATCAG
EST: TTTTTGTCCTTGGATTATGGATGCTAGATCTTGCCAACAATACGGTGCAG GGGCCAGCTCGTGCTCTTCTAGCTGATCTATCAG
genomic: TTTTTGTCCTTGGATTTTGGATGCTAGATCTTGCAAACAATACGGTGCAGgtaaacttgt ... ttgtttatagGGCCCAGCTCGTGCTCTTCTAGCTGATCTATCAG
attccaccacttctttttatgtctgtctgctaaactaaaattttattgtttatagGGCCCAGCTCGTGCTCTTCTAGCTGATCTATCAG
aactaaa putative branch site (score: 2)
ttttatt CT-rich tract
tgctaaactaaaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaacttgttaagatggtccaaatgcattccaccacttctttttatgtctgtctgctaaactaaaattttattgtttatagGGCCCAGCTCGTGCTCTTCTAGCTGATCTATCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT