1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tttcctcattctgaaatctttagcataatgatgaataaaatctatgagatacccagtccgatttctgatttgttcattatttttggtgttttaatttcagAGAAGTTGCTGCAACCAGAGTGGAGGAGGTGATTGTGCACAAAGGTTCCATAGAAAAATTATGTCAAGTGGTAAAGAAAGTATGTCTTTTCTGCAGTGTC
species | Vitis vinifera |
transcript | Vv01s0026g01790.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AGGAGTGTTCAGAAGCGACAGATCTTTAATGTCTTCTAGAGACGGTAGTG AGAAGTTGCTGCAACCAGAGTGGAGGAGGTGATTGTGCACAAAGGTTCCATEST: gi|351051569|gb|FQ450121.1|FQ450121
genomic: AGGAGTGTTCAGAAGTGACAGATCTTTAATGTCTTCTAGAGACGGTAGTGgtaagaactt ... ttaatttcagAGAAGTTGCTGCAACCAGAGTGGAGGAGGTGATTGTGCACAAAGGTTCCAT
EST: AGGAGTGTTCAGAAGCGACAGATCTTTAATGTCTTCTAGAGACGGTAGTG AGAAGTTGCTGCAACCAGAGTGGAGGAGGTGATTGTGCACAAAGGTTCCAT
genomic: AGGAGTGTTCAGAAGTGACAGATCTTTAATGTCTTCTAGAGACGGTAGTGgtaagaactt ... ttaatttcagAGAAGTTGCTGCAACCAGAGTGGAGGAGGTGATTGTGCACAAAGGTTCCAT
gagatacccagtccgatttctgatttgttcattatttttggtgttttaatttcagAGAAGTTGCTGCAACCAGAGTGGAGGAGGTGATTGTGCACAAAGGTTCCATAGAAAAATTATGTCAAGTGGTAAAGAAAGTATGTCTTTTCTGCAGTGTC
ttttaat putative branch site (score: 3)
attatttttggtgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttcctcattctgaaatctttagcataatgatgaataaaatctatgagatacccagtccgatttctgatttgttcattatttttggtgttttaatttcagAGAAGTTGCTGCAACCAGAGTGGAGGAGGTGATTGTGCACAAAGGTTCCATAGAAAAATTATGTCAAGTGGTAAAGAAAGTATGTCTTTTCTGCAGTGTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - ctcattc
- - - - - - - - - - - - - - - - -aataaaa
- - - - - - - - - - - - - - - - - - - - -ctatgag
- - - - - - - - - - - - - - - - - - - - - - - - - -cccagtc