1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtttatgctttttaaattttaactattgaatctttgccttgtaattttgtaacaaattagtggaatggattttccctgataattacatctactgctatttttccgcagGTAAAGGAAAGCATCCAAACTGAGCAAGCATGCACAGTACGTATCTTAAATTACAG
species | Vitis vinifera |
transcript | Vv01s0026g01590.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AGTGTATGTTTTTGAGTGGTGTGGATACGGATCCATCAACTCTATTGCAG GTAAAGGAAAGCATCCAAACTGAGAAAGCATGCACAGTACGTATCTTAAATEST: gi|22010530|gb|BQ795564.1|BQ795564
genomic: AGTGTATGTTTTTGAGTGGTGTGGATACGGATCCATCAACTCTATTGCAGgtttatgctt ... ttttccgcagGTAAAGGAAAGCATCCAAACTGAGCAAGCATGCACAGTACGTATCTTAAAT
EST: AGTGTATGTTTTTGAGTGGTGTGGATACGGATCCATCAACTCTATTGCAG GTAAAGGAAAGCATCCAAACTGAGCAAGCATGCACAGTACGTATCTTAAATEST: gi|254917156|gb|GR905982.1|GR905982
genomic: AGTGTATGTTTTTGAGTGGTGTGGATACGGATCCATCAACTCTATTGCAGgtttatgctt ... ttttccgcagGTAAAGGAAAGCATCCAAACTGAGCAAGCATGCACAGTACGTATCTTAAAT
EST: AGTGTATGTTTTTGAGTGGTGTGGATACGGATCCATCAACTCTATTGCAG GTAAAGGAAAGCATCCAAACTGAGCAAGCATGCACAGTACGTATCTTAAATEST: gi|110427355|gb|EC993791.1|EC993791
genomic: AGTGTATGTTTTTGAGTGGTGTGGATACGGATCCATCAACTCTATTGCAGgtttatgctt ... ttttccgcagGTAAAGGAAAGCATCCAAACTGAGCAAGCATGCACAGTACGTATCTTAAAT
EST: AGTGTATGTTTTTGAGTGGTGTGGATACGGATCCATCAACTCTATTGCAG GTAAAGGAAAGCATCCAAACTGAGCAAGCATGCACAGTACGTATCTTAAATEST: gi|110379815|gb|EC945035.1|EC945035
genomic: AGTGTATGTTTTTGAGTGGTGTGGATACGGATCCATCAACTCTATTGCAGgtttatgctt ... ttttccgcagGTAAAGGAAAGCATCCAAACTGAGCAAGCATGCACAGTACGTATCTTAAAT
EST: AGTGTATGTTTTTGAGTGGTGTGGATACGGATCCATCAACTCTATTGCAG GTAAAGGAAAGCATCCAAACTGAGAAAGCATGCACAGTACGTATCTTAAATEST: gi|71859761|gb|DT008816.1|DT008816
genomic: AGTGTATGTTTTTGAGTGGTGTGGATACGGATCCATCAACTCTATTGCAGgtttatgctt ... ttttccgcagGTAAAGGAAAGCATCCAAACTGAGCAAGCATGCACAGTACGTATCTTAAAT
EST: AGTGTATGTTTTTGAGTGGTGTGGATACGGATCCATCAACTCTATTGCAG GTAAAGGAAAGCATCCAAACTGAGAAAGCATGCACAGTACGTATCTTAAAT
genomic: AGTGTATGTTTTTGAGTGGTGTGGATACGGATCCATCAACTCTATTGCAGgtttatgctt ... ttttccgcagGTAAAGGAAAGCATCCAAACTGAGCAAGCATGCACAGTACGTATCTTAAAT
aaattagtggaatggattttccctgataattacatctactgctatttttccgcagGTAAAGGAAAGCATCCAAACTGAGCAAGCATGCACAGTACGTATCTTAAATTACAG
ccctgat putative branch site (score: 4)
ctatttttcc putative PPT
ataattacat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttatgctttttaaattttaactattgaatctttgccttgtaattttgtaacaaattagtggaatggattttccctgataattacatctactgctatttttccgcagGTAAAGGAAAGCATCCAAACTGAGCAAGCATGCACAGTACGTATCTTAAATTACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG