1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...aatatttaacagcacatgtatactattaccctgaagcattttagcaattttctgaagatcccatctgatactacattttcatctgtttggtttacttcagGATTTGGACTTGCTTGGAATTCTTGCTGAAACAGAAAAGCGTGGCTTGACCTTTGATCAACTACTTACTATTCCAGAGCAAGATGAATGGGTATACAGTG
species | Vitis vinifera |
transcript | Vv01s0026g00920.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ATGCTGAAAATATGTGGAATGAAGCTCTGAATAAGAGGCTTGAGACCGAG GATTTGGACTTGCTTGGAATTCTTGCTGAAACAGAAAAGCGTGGCTTGACCEST: gi|27579647|gb|CB002342.1|CB002342
genomic: ATGCTGAAAATATGTGGAATGAAGCTCTAAATAAGAGGCTTGAGACCGAGgtatttgtgt ... tttacttcagGATTTGGACTTGCTTGGAATTCTTGCTGAAACAGAAAAGCGTGGCTTGACC
EST: ATGCTGAAAATATGTGGAATGAAGCTCTAAATAAGAGGCTTGAGACCGAG GATTTGGACTTGCTTGGAATTCTTGCTGAAACAGAAAAGCGTGGCTTGACCEST: gi|22008704|gb|BQ793738.1|BQ793738
genomic: ATGCTGAAAATATGTGGAATGAAGCTCTAAATAAGAGGCTTGAGACCGAGgtatttgtgt ... tttacttcagGATTTGGACTTGCTTGGAATTCTTGCTGAAACAGAAAAGCGTGGCTTGACC
EST: GGCTTGAGACCGAG GATTTGGACTTGCTTGGAATTCTTGCTGAAACAGAAAAGCGTGGCTTGACCEST: gi|27579589|gb|CB002284.1|CB002284
genomic: GGCTTGAGACCGAGgtatttgtgt ... tttacttcagGATTTGGACTTGCTTGGAATTCTTGCTGAAACAGAAAAGCGTGGCTTGACC
EST: ATGCTGAAAATATGTGGAATGAAGCTCTAAATAAGAGGCTTGAGACCGAG GATTTGGACTTGCTTGGAATTCTTGCTGAAACAGAAAAGCGTGGCTTGACCEST: gi|110425597|gb|EC991986.1|EC991986
genomic: ATGCTGAAAATATGTGGAATGAAGCTCTAAATAAGAGGCTTGAGACCGAGgtatttgtgt ... tttacttcagGATTTGGACTTGCTTGGAATTCTTGCTGAAACAGAAAAGCGTGGCTTGACC
EST: ATGCTGAAAATATGTGGAATGAAGCTCTAAATAAGAGGCTTGAGACCGAG GATTTGGACTTGCTTGGAATTCTTGCTGAAACAGAAAAGCGTGGCTTGACCEST: gi|32245156|gb|CD710975.1|CD710975
genomic: ATGCTGAAAATATGTGGAATGAAGCTCTAAATAAGAGGCTTGAGACCGAGgtatttgtgt ... tttacttcagGATTTGGACTTGCTTGGAATTCTTGCTGAAACAGAAAAGCGTGGCTTGACC
EST: ATGCTGAAAATATGTGGAATGAAGCTCTAAATAAGAGGCTTGAGACCGAG GATTTGGACTTGCTTGGAATTCTTGCTGAAACAGAAAAGCGTGGCTTGACCEST: gi|18458423|gb|BM436701.1|BM436701
genomic: ATGCTGAAAATATGTGGAATGAAGCTCTAAATAAGAGGCTTGAGACCGAGgtatttgtgt ... tttacttcagGATTTGGACTTGCTTGGAATTCTTGCTGAAACAGAAAAGCGTGGCTTGACC
EST: ATGCTGAAAATATGTGGAATGAAGCTCTAAATAAGAGGCTTGAGACCGAG GATTTGGACTTGCTTGGAATTCTTGCEST: gi|110419714|gb|EC985963.1|EC985963
genomic: ATGCTGAAAATATGTGGAATGAAGCTCTAAATAAGAGGCTTGAGACCGAGgtatttgtgt ... tttacttcagGATTTGGACTTGCTTGGAATTCTTGC
EST: ATGCTGAAAATATGTGGAATGAAGCTCTAAATAAGAGGCTTGAGACCGAG GATTTGGACTTGCTTGGAATTCTTGCTGAAACAGAAAAGCGTGGCTTGACCEST: gi|30322099|gb|CD005361.1|CD005361
genomic: ATGCTGAAAATATGTGGAATGAAGCTCTAAATAAGAGGCTTGAGACCGAGgtatttgtgt ... tttacttcagGATTTGGACTTGCTTGGAATTCTTGCTGAAACAGAAAAGCGTGGCTTGACC
EST: ATGCTGAAAATATGTGGAATGAAGCTCTANATAAGAGGCTTGAGACCGAG GATTTGGACTTGCTTGGAATTCTTGCTGANACAGAAAAGCGTGGCTTGACCEST: gi|27578697|gb|CB001392.1|CB001392
genomic: ATGCTGAAAATATGTGGAATGAAGCTCTAAATAAGAGGCTTGAGACCGAGgtatttgtgt ... tttacttcagGATTTGGACTTGCTTGGAATTCTTGCTGAAACAGAAAAGCGTGGCTTGACC
EST: ATGCTGAAAATATGTGGAATGAAGCTCTAAATAAGAGGCTTGAGACCGAG GATTTGGACTTGCTTGGAATTCTTGCTGAAACAGAAAAGCGTGGCTTGACCEST: gi|27581381|gb|CB004076.1|CB004076
genomic: ATGCTGAAAATATGTGGAATGAAGCTCTAAATAAGAGGCTTGAGACCGAGgtatttgtgt ... tttacttcagGATTTGGACTTGCTTGGAATTCTTGCTGAAACAGAAAAGCGTGGCTTGACC
EST: ATGCTGAAAATATGTGGAATGAAGCTCTAAATAAGAGGCTTGAGACCGAG GATTTGGACTTGCTTGGAATTCTTGCTGAAACAGAAAAGCGTGGCTTGACCEST: gi|30322426|gb|CD005688.1|CD005688
genomic: ATGCTGAAAATATGTGGAATGAAGCTCTAAATAAGAGGCTTGAGACCGAGgtatttgtgt ... tttacttcagGATTTGGACTTGCTTGGAATTCTTGCTGAAACAGAAAAGCGTGGCTTGACC
EST: ATGCTGAAAATATGTGGAATGAAGCTCTAAATAAGAGGCTTGAGACCGAG GATTTGGACTTGCTTGGAATTCTTGCTGEST: gi|34545798|gb|CF514030.1|CF514030
genomic: ATGCTGAAAATATGTGGAATGAAGCTCTAAATAAGAGGCTTGAGACCGAGgtatttgtgt ... tttacttcagGATTTGGACTTGCTTGGAATTCTTGCTG
EST: ATGCTGAAAATATGTGGAATGAAGCTCTAAATAAGAGGCTTGAGACCGAG GATTTGGACTTGCTTGGAATTCTTGCTGAAACAGAAAAGCGTGGCTTGACCEST: gi|34545878|gb|CF514110.1|CF514110
genomic: ATGCTGAAAATATGTGGAATGAAGCTCTAAATAAGAGGCTTGAGACCGAGgtatttgtgt ... tttacttcagGATTTGGACTTGCTTGGAATTCTTGCTGAAACAGAAAAGCGTGGCTTGACC
EST: ATGCTGAAAATATGTGGAATGAAGCTCTAAATAAGAGGCTTGAGACCGAG GATTTGGACTTGCTTGGAATTCTTGCTGAAACAGAAAAGCGTGGCTTGACCEST: gi|30323405|gb|CD006667.1|CD006667
genomic: ATGCTGAAAATATGTGGAATGAAGCTCTAAATAAGAGGCTTGAGACCGAGgtatttgtgt ... tttacttcagGATTTGGACTTGCTTGGAATTCTTGCTGAAACAGAAAAGCGTGGCTTGACC
EST: ATGCTGAAAATATGTGGAATGAAGCTCTAAATAAGAGGCTTGAGACCGAG GATTTGGACTTGCTTGGAATTCTTGCTGAAACAGAAAAGCGTGGCTTGACCEST: gi|28970697|gb|CB349730.1|CB349730
genomic: ATGCTGAAAATATGTGGAATGAAGCTCTAAATAAGAGGCTTGAGACCGAGgtatttgtgt ... tttacttcagGATTTGGACTTGCTTGGAATTCTTGCTGAAACAGAAAAGCGTGGCTTGACC
EST: ATGCTGAAAATATGTGGAATGAAGCTCTAAATAAGAGGCTTGAGACCGAG GATTTGGACTTGCTTGGAATTCTTGCTGAAACAGAAAAGCGTGGCTTGACC
genomic: ATGCTGAAAATATGTGGAATGAAGCTCTAAATAAGAGGCTTGAGACCGAGgtatttgtgt ... tttacttcagGATTTGGACTTGCTTGGAATTCTTGCTGAAACAGAAAAGCGTGGCTTGACC
aattttctgaagatcccatctgatactacattttcatctgtttggtttacttcagGATTTGGACTTGCTTGGAATTCTTGCTGAAACAGAAAAGCGTGGCTTGACCTTTGATCAACTACTTACTATTCCAGAGCAAGATGAATGGGTATACAGTG
atctgat putative branch site (score: 4)
tttacttc putative PPT
tacatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatatttaacagcacatgtatactattaccctgaagcattttagcaattttctgaagatcccatctgatactacattttcatctgtttggtttacttcagGATTTGGACTTGCTTGGAATTCTTGCTGAAACAGAAAAGCGTGGCTTGACCTTTGATCAACTACTTACTATTCCAGAGCAAGATGAATGGGTATACAGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - -gcacatg
- - - - - - - - - - - - - -accctga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cccatct