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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgaagctccatttttatatcatccacaccatttgaccccatccttagccacttccttattttcttactattctgatcctcactcatatgggttgtttatcatctcccttaatcagATTGAAATCATCAATGACTTACCTGAAGACAAAACTATCACAGTATACAGATGTGGGCCATTGGTTGATCTGTGCCGTGGGCCCCATATACCAAATACAT

Basic information

species Vitis vinifera
transcript Vv01s0026g00340.t01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0026g00340.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: LOC_Os08g19850.1 (Oryza sativa), 3'ss of exon 5
gtaagtgaagctccatttttatatcatccacaccatttgaccccatccttagccacttccttattttcttactattctgatcctcactcatatgggttgtttatcatctcccttaatcagATTGAAATCATCAATGACTTACCTGAAGACAAAACTATCACAGTATACAGATGTGGGCCATTGGTTGATCTGTGCCGTGGGCCCCATATACCAAATACAT
 ||||   |     |||   ||     ||  |  || |    |      || |   ||    ||||| |||  ||| |     | | |  | ||  |||| | ||             || |||||||||| ||||| || ||||||||||| || || ||||||||||||||||| ||  | ||||| || ||||||||||| || || || ||||| |
ataagcataagcgaatta--atgaggccctaaatatctatttctgcttatatcacatttgagattttattaa-atttt-----ttatttgtttgaattgtgtttc------------tagGTTGAAATCATTAATGAGTTGCCTGAAGACAAGACCATTACAGTATACAGATGTGGTCCTCTAGTTGACCTTTGCCGTGGGCCACACATCCCCAATACTT

upper sequence: Vv01s0026g00340.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GRMZM2G553314_T01 (Zea mays), 3'ss of exon 5
gtaagtgaagctccatttttatatcatccacaccatttgaccccatccttagccacttccttattttcttactat-tctgatcctcactcatatgggttgtttatcatctcccttaatcagATTGAAATCATCAATGACTTACCTGAAGACAAAACTATCACAGTATACAGATGTGGGCCATTGGTTGATCTGTGCCGTGGGCCCCATATACCAAATACAT
      | | |     ||   ||   ||       ||| |  ||    | |      | ||||| ||     ||| |  ||    ||  |||           |     |    |  |||| |||||||||| ||||| || ||||| ||||| || || || |||||||| ||||| || || ||||| || ||||||||||| || || |||||||| |
------gcaaccttccttgc-tactgtcttgtttgtttcattcctctatcattttgctgcttatgttaaatatatatacgacttccatccattcttacaaaaaagtgaattatatgttcagGTTGAAATCATTAATGAGTTGCCTGAGGACAAGACCATTACTGTATACAGGTGTGGTCCTTTAGTTGACCTATGCCGTGGGCCACACATCCCAAATACTT

upper sequence: Vv01s0026g00340.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GRMZM2G439885_T01 (Zea mays), 3'ss of exon 3
gtaagtgaagctccatttttatatcatccacaccatttgaccccatccttagccacttccttattttcttactattctgatcctcactcatatgggttgtttatcatctcccttaatcagATTGAAATCATCAATGACTTACCTGAAGACAAAACTATCACAGTATACAGATGTGGGCCATTGGTTGATCTGTGCCGTGGGCCCCATATACCAAATACAT
                 |   || ||  |    ||||   | | ||| ||     || | |   ||   ||    |  ||     |  |||     |     |     |    |  |||| |||||||||| ||||| || ||||| ||||| |  || || |||||||| ||||| || || ||||| || ||||||||||| || || |||||||| |
----------------ctacttaacactcgtttcattc--ctctatcatt--ttgctgcttatgttaaatatatatacgacttctatccattcttataaaaaagggaattatatgttcagGTTGAAATCATGAATGAGTTGCCTGAGGACAAGAGCATTACTGTATACAGGTGTGGTCCTTTAGTTGACCTATGCCGTGGGCCACACATCCCAAATACTT

upper sequence: Vv01s0026g00340.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA01G03930.1 (Glycine max), 3'ss of exon 4
------------------------------------------------------------------------------gtaagtgaagctccatttttatatcatccacaccatttgaccccatccttagccacttccttattttcttactattctgatcctcactcatatgggttgtttat-catctcccttaatcagATTGAAATCATCAATGACTTACCTGAAGACAAAACTATCACAGTATACAGATGTGGGCCATTGGTTGATCTGTGCCGTGGGCCCCATATACCAAATACAT
                                                                              ||   |  |  | |||  |  ||| |||    |||| |   || ||  |   ||||    || ||||  ||     |  ||   || |    ||  |||  |       |  | | ||||||| || || |||||||| || ||||  ||||||||||||||||||||||||||||| || ||||| ||| |||| ||||||||||||||||| |||||||
gcaagtataacttttttttcttctttgagggtgaggtggggtgtggataagcttcttgttttcatgatcttatctattgttttttgaattacatcatcttattatctgagccatgtt-tcctattttcttccaccaattt-tttttatatctcacaaattaacaatttagtgctttggctccatggttatcatgatcagATCGAGATTATCAATGATTTGCCTGCCGACAAAACTATCACAGTATACAGATGTGGTCCCTTGGTGGATTTGTGTCGTGGGCCCCATATACCTAATACAT

upper sequence: Vv01s0026g00340.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA02G03750.1 (Glycine max), 3'ss of exon 4
gtaagtgaagctccatttttatatcatccacaccatttgaccccatccttagccacttccttattttcttactattctgatcctcactcatatgggttgtttat-catctcccttaatcagATTGAAATCATCAATGACTTACCTGAAGACAAAACTATCACAGTATACAGATGTGGGCCATTGGTTGATCTGTGCCGTGGGCCCCATATACCAAATACAT
                 | |    |||     | ||||     || |  ||      |   || ||| |||    ||  ||   || |    ||  |||  | |     |    | ||||| |||| || |||||||| || ||||  ||||||||||| ||||||||||||||||| || ||||||||| |||| ||||| ||||||||||| |||||||
----------------atctgagccatatttcctattttctttcacctataa-----tttataattttttatatctcaaattaacaatttggtgctttggctctgtggttattgtgatcagGTTGAGATTATCAATGATTTGCCTGCCGACAAAACTATTACAGTATACAGATGTGGCCCCTTGGTTGATTTGTGTCGTGGACCCCATATACCTAATACAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcttactattctgatcctcactcatatgggttgtttatcatctcccttaatcagATTGAAATCATCAATGACTTACCTGAAGACAAAACTATCACAGTATACAGATGTGGGCCATTGGTTGATCTGTGCCGTGGGCCCCATATACCAAATACAT
               tcctcac  putative branch site (score: 2)
                                  tttatcatctccctt  putative PPT
                               ttgtttat  TA-rich tract