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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaactgatccatccagtattgatctttgatacttctcaatcttgacaaatccatgtgaaatgttctccatgattgcagGGATTGCAGTGCTTATTGCTGCTGGGTTTTTTGGTTACATGCTGGCACTTCTGCAACGTAGAGTGGGCACAATTGTGTCCTCTGAAAAT

Basic information

species Vitis vinifera
transcript Vv01s0026g00330.t01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0026g00330.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA08G39910.1 (Glycine max), 3'ss of exon 6
gtaaactgatccatccagtatt--------gatctttgatacttctcaatcttga-caaatccatgtgaaatgttctccatgattgcagGGATTGCAGTGCTTATTGCTGCTGGGTTTTTTGGTTACATGCTGGCACTTCTGCAACGTAGAGTGGGCACAATTGTGTCCTCTGAAAAT
||||||| |  ||| ||  |||         |  | ||  |  | | | | || | |||||  |     | ||   || ||| || ||||||||||| ||||| |||  ||||| || |||||||||||||||||| | ||||| |||||  | || ||||||||||| ||  |  | 
gtaaactaaatcatacatgattttctgtagaaattctgtcaagtgttattgttaatcaaatttagactgattgccttcaatg-ttacagGGATTGCAATGCTTGTTGGGGCTGGATTCTTTGGTTACATGCTGGCATTACTGCAGCGTAGGCTTGGTACAATTGTGTCATCCCAGGAA

upper sequence: Vv01s0026g00330.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA01G03880.1 (Glycine max), 3'ss of exon 5
---------gtaaactgatccatccagtattgatct-ttgatacttctcaatcttgacaaatccatgtgaaatgttctccatgattgcagGGATTGCAGTGCTTATTGCTGCTGGGTTTTTTGGTTACATGCTGGCACTTCTGCAACGTAGAGTGGGCACAATTGTGTCCTCTGAAAAT
          | |     || |||||   |   ||| |||| | |  || |  |  | ||||  |  |  | ||   || ||  ||||||| ||||||||||| |||| |||||| || |||||||| ||||| ||| |  | || |||||| | || ||||||||| | ||| |  ||
gtaggctatatcagtcattcaatccaaattctttctcttgaaaatattctaatt--aaaaatgaagattgattgcaatcaat--ttgcagGAATTGCAGTGCTCATTGGTGCTGGCTTCTTTGGTTATATGCTTGCATTATTACAGCGTAGACTTGGTACAATTGTGGCATCTCAGGAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttgatacttctcaatcttgacaaatccatgtgaaatgttctccatgattgcagGGATTGCAGTGCTTATTGCTGCTGGGTTTTTTGGTTACATGCTGGCACTTCTGCAACGTAGAGTGGGCACAATTGTGTCCTCTGAAAAT
                tcttgac  putative branch site (score: 3)
                                       ttctccat  putative PPT
                                  aaatgtt  TA-rich tract