1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tccaatctccacgaggtccacctcctttctttctcgagaatcccccttggatgatataaaatctaacgtcaagcacaagttcatatccacacccatctctCGTACTCTTTCCCTCTCCCAACCCCCCTGCCTCGCTCCTCCCCCTCCCTCTCTCTCTCTGTGCATGTAACCAAATTGAAC
species | Vitis vinifera |
transcript | Vv01s0011g04730.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
cttggatgatataaaatctaacgtcaagcacaagttcatatccacacccatctctCGTACTCTTTCCCTCTCCCAACCCCCCTGCCTCGCTCCTCCCCCTCCCTCTCTCTCTCTGTGCATGTAACCAAATTGAAC
atctaac putative branch site (score: 2)
cccatctct putative PPT
atgatataaaatctaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tccaatctccacgaggtccacctcctttctttctcgagaatcccccttggatgatataaaatctaacgtcaagcacaagttcatatccacacccatctctCGTACTCTTTCCCTCTCCCAACCCCCCTGCCTCGCTCCTCCCCCTCCCTCTCTCTCTCTGTGCATGTAACCAAATTGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - -tctccac
- - - - - - - - -ccacctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - -ataaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcaagca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catatcc