1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...attaaaattgattctcaaaatttgtcactatggttttatgttaatttgcatttttagattcttgattgctgattcattttatttctcatcccttcttcagGTGTATGATCAGTGGGGAGATGTTATATGCCATGGAAAGGATAGCATTATAAGGGAGGGACATAAGAGCTTCCCAAGTGGTCACACTTCGT
species | Vitis vinifera |
transcript | Vv01s0011g04160.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GACGGCCTCGGCCAGACTTCTTTTGGCGCTGCTTTCCTGATGGAAAAGAT GTGTATGATCAGTGGGGAGATGTTATATGCCATGGAAAGGATAGCATTATAEST: gi|110364780|gb|EC928276.1|EC928276
genomic: GACGGCCTCGGCCAGACTTCTTTTGGCGCTGCTTTCCTGATGGAAAAGATgtatgtcaat ... ccttcttcagGTGTATGATCAGTGGGGAGATGTTATATGCCATGGAAAGGATAGCATTATA
EST: GACGGCCTCGGCCAGACTTCTTTTGGCGCTGCTTTCCTGATGGAAAAGAT GTGTATGATCAGTGGGGAGATGTTATATGCCATGGAAAGGATAGCATTATAEST: gi|71856392|gb|DT005447.1|DT005447
genomic: GACGGCCTCGGCCAGACTTCTTTTGGCGCTGCTTTCCTGATGGAAAAGATgtatgtcaat ... ccttcttcagGTGTATGATCAGTGGGGAGATGTTATATGCCATGGAAAGGATAGCATTATA
EST: GACGGCCTCGGCCAGACTTCTTTTGGCGCTGCTTTCCTGATGGAAAAGAT GTGTATGATCAGTGGGGAGATGTTATATGCCATGGAAAGGATAGCATTATA
genomic: GACGGCCTCGGCCAGACTTCTTTTGGCGCTGCTTTCCTGATGGAAAAGATgtatgtcaat ... ccttcttcagGTGTATGATCAGTGGGGAGATGTTATATGCCATGGAAAGGATAGCATTATA
ttgcatttttagattcttgattgctgattcattttatttctcatcccttcttcagGTGTATGATCAGTGGGGAGATGTTATATGCCATGGAAAGGATAGCATTATAAGGGAGGGACATAAGAGCTTCCCAAGTGGTCACACTTCGT
tgctgat putative branch site (score: 3)
ttcattttatttctca CT-rich tract
tgattcattttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attaaaattgattctcaaaatttgtcactatggttttatgttaatttgcatttttagattcttgattgctgattcattttatttctcatcccttcttcagGTGTATGATCAGTGGGGAGATGTTATATGCCATGGAAAGGATAGCATTATAAGGGAGGGACATAAGAGCTTCCCAAGTGGTCACACTTCGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
attaaaa
- - - - - - - tcaaaat
- - - - - - - - - - - - -cactatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgattgc