1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaactttcaaatttactactgaataaatattataaaattgataaacataattagacaaaaaagtaaagcaccaggattttccttctctgtttataaattccataatcttatgaattgaacttctagttgtttccatgttcagTTGACTGAGAAGCCAATAGTTGTTTATCCCAATAGTGGTGAGGTATGGGACGGTAGAGCCAAGAGATGGCTG
species | Vitis vinifera |
transcript | Vv01s0011g03500.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTGTGCACCACCCCATTTCCTTGAGAGCCTCATCTGCAAATTCCAAG-AG TTGACTGANAAGCCAATAEST: gi|30322765|gb|CD006027.1|CD006027
genomic: TTGTGCACCACCCCATTTCCTTGAGAGCCTCATCTGCAAATTC-AAGGAGgtaactttca ... ccatgttcagTTGACTGAGAAGCCAATA
EST: ATTGTGCACCACCCCATTTCCTTGAGAGCCTCATCTGCAAATTCAAGGAG TTGACTGAGAAGCCAATAGTTGTTTATCCCAATAGTGGTGAGGTATGGGACEST: gi|45770242|gb|CN006094.1|CN006094
genomic: ATTGTGCACCACCCCATTTCCTTGAGAGCCTCATCTGCAAATTCAAGGAGgtaactttca ... ccatgttcagTTGACTGAGAAGCCAATAGTTGTTTATCCCAATAGTGGTGAGGTATGGGAC
EST: ATTGTGCACCACCCCATTTCCTTGAGAGCCTCATCTGCAAATTCAAGGAG TTGACCGAGAAGCCAATAGTTGTTTATCCCAATAGTGGTGAGGTATGGGACEST: gi|32269666|gb|CD718825.1|CD718825
genomic: ATTGTGCACCACCCCATTTCCTTGAGAGCCTCATCTGCAAATTCAAGGAGgtaactttca ... ccatgttcagTTGACTGAGAAGCCAATAGTTGTTTATCCCAATAGTGGTGAGGTATGGGAC
EST: ATTGTGCACCACCCCATTTCCTTGAGAGCCTCATCTGCAAATTCAAGGAG TTGACTGAGAAGCCAATAGTTGTTTATCCCAATAGTGGTGAGGTATGGGAC
genomic: ATTGTGCACCACCCCATTTCCTTGAGAGCCTCATCTGCAAATTCAAGGAGgtaactttca ... ccatgttcagTTGACTGAGAAGCCAATAGTTGTTTATCCCAATAGTGGTGAGGTATGGGAC
tgtttataaattccataatcttatgaattgaacttctagttgtttccatgttcagTTGACTGAGAAGCCAATAGTTGTTTATCCCAATAGTGGTGAGGTATGGGACGGTAGAGCCAAGAGATGGCTG
ttgtttcc CT-rich tract
ataatcttatgaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaactttcaaatttactactgaataaatattataaaattgataaacataattagacaaaaaagtaaagcaccaggattttccttctctgtttataaattccataatcttatgaattgaacttctagttgtttccatgttcagTTGACTGAGAAGCCAATAGTTGTTTATCCCAATAGTGGTGAGGTATGGGACGGTAGAGCCAAGAGATGGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG