Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactcgcttttgcttgctactttggaagacgagttaaatgtgttatttttttggcagtaaactaagtaattggatattttattatcttgcagTTGAAGAGTTTAAAGAACTTTGGGAGGAGTATGAAAATAACTCTTCCTTAGAGGCTAATCTTGTAAAAGATTTTGAAAAA

Basic information

species Vitis vinifera
transcript Vv01s0011g02440.t01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0011g02440.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA01G23210.1 (Glycine max), 3'ss of exon 1
gtactcgcttttgcttgctactttggaagacgagttaaatgtgttatttttttggcagtaaactaagtaattggatattttattatc-ttgcagTTGAAGAGTTTAAAGAACTTTGGGAGGAGTATGAAAATAACTCTTCCTTAGAGGCTAATCTTGTAAAAGATTTTGAAAAA
        |     ||  |  | ||| | ||   ||| |    ||     |||||||  ||| | | |    ||  | ||| || |  || ||| ||||||| | |||||||||||||  ||||||||||| || ||||| |||||||| ||||||||||| |||||||| || 
----gtattgcaaattatttttctgggaaactt-ttacagagattccaaatttggcatcaaatttacttga-ggccactttgtttttattacagCTGAAGAGATCAAAGAACTTTGGGCAGAGTATGAAAACAATTCTTCTTTAGAGGCAAATCTTGTAAAGGATTTTGACAAG

upper sequence: Vv01s0011g02440.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA02G14300.1 (Glycine max), 3'ss of exon 4
-----gtactcgcttttgcttgctactttgga-agacgagttaaatgtgttatttttttggcagtaaactaagtaattggatattttattatcttgcagTTGAAGAGTTTAAAGAACTTTGGGAGGAGTATGAAAATAACTCTTCCTTAGAGGCTAATCTTGTAAAAGATTTTGAAAAA
     |||     |||| ||||  | |||  | |||      |||| ||  ||    ||  |       || || | |   | ||||  | | || ||| ||| ||| | |||||||||||||| ||||||||||| || |||||  ||||||| |||||||| || |||||||| || 
gtattgtaaattatttttcttggaattttttacagagattccaaatttggcatcaaatttac------ttaggtcacttttttttttcctttattacagCTGAGGAGATCAAAGAACTTTGGGAAGAGTATGAAAACAATTCTTCTGTAGAGGCAAATCTTGTTAAGGATTTTGACAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgtgttatttttttggcagtaaactaagtaattggatattttattatcttgcagTTGAAGAGTTTAAAGAACTTTGGGAGGAGTATGAAAATAACTCTTCCTTAGAGGCTAATCTTGTAAAAGATTTTGAAAAA
                                       ttttatt  CT-rich tract
                    taaactaagtaattgg  TA-rich tract