1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...aatacagaaagatggttaacatatgtggacacaacataaacatgcacaaattgtaacagaaggttatacatgtctgtgaccagttttcatgttcatccagGTTGAGCTGATTTTGCAAGCACTGGAATATGAAATGG
species | Vitis vinifera |
transcript | Vv01s0011g02430.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ATGAAAATAACTCTTCCTTAGAGGCTAATCTTGTAAAAGATTTTGACAAA GTTGAGCTGATTTTGCAAGCACTGGAATATGAAATGGEST: gi|110390616|gb|EC955535.1|EC955535
genomic: ATGAAAATAACTCTTCCTTAGAGGCTAATCTTGTAAAAGATTTTGACAAAgtatgcatca ... gttcatccagGTTGAGCTGATTTTGCAAGCACTGGAATATGAAATGG
EST: ATGAAAATAACTCTTCCTTAGAGGCTAATCTTGTAAAAGATTTTGACAAA GTTGAGCTGATTTTGCAAGCACTGGAATATGAAATGGEST: gi|110424006|gb|EC990359.1|EC990359
genomic: ATGAAAATAACTCTTCCTTAGAGGCTAATCTTGTAAAAGATTTTGACAAAgtatgcatca ... gttcatccagGTTGAGCTGATTTTGCAAGCACTGGAATATGAAATGG
EST: ATGAAAATAACTCTTCCTTAGAGGCTAATCTTGTAAAAGATTTTGACAAA GTTGAACTGATTTTGCAAGCACTGGAATATGAAATGGEST: gi|56408738|gb|CX016990.1|CX016990
genomic: ATGAAAATAACTCTTCCTTAGAGGCTAATCTTGTAAAAGATTTTGACAAAgtatgcatca ... gttcatccagGTTGAGCTGATTTTGCAAGCACTGGAATATGAAATGG
EST: ATGAAAATAACTCTTCCTTAGAGGCTAATCTTGTAAAAGATTTTGACAAA GTTGAGCTGATTTTGCAAGCACTGGAATATGAAATGG
genomic: ATGAAAATAACTCTTCCTTAGAGGCTAATCTTGTAAAAGATTTTGACAAAgtatgcatca ... gttcatccagGTTGAGCTGATTTTGCAAGCACTGGAATATGAAATGG
acaaattgtaacagaaggttatacatgtctgtgaccagttttcatgttcatccagGTTGAGCTGATTTTGCAAGCACTGGAATATGAAATGG
ttgtaac putative branch site (score: 2)
ttcatcc putative PPT
ttatacat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatacagaaagatggttaacatatgtggacacaacataaacatgcacaaattgtaacagaaggttatacatgtctgtgaccagttttcatgttcatccagGTTGAGCTGATTTTGCAAGCACTGGAATATGAAATGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - -agaaaga
- - - - - - - - - - - - - -gacacaa
- - - - - - - - - - - - - - - - - - - - catgcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - aacagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acatgtc