1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...agaggtcactttcattcaacttcccagaatactgttactatatattgctttaatgaggggaacagagtttgcatttcctcaagttgtactgttagttcagGAATAGCCCGTTGCTTTACTTTTGGTGGAAGTAGAAAAAGAGTGCTTCATGATCCTGCCATTAAGCCGCGGTCAGATTTATCCAAGGAACAATACATGAA
species | Vitis vinifera |
transcript | Vv01s0011g02070.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GTTTGGGGTTGTACAAGATGCTGATCGCCTTGATGCAATTGGTGCAATTG GAATAGCCCGTTGCTTTACTTTTGGTGGAAGTAGAAAAAGAGTGCTTCATGEST: gi|294965477|gb|GW839048.1|GW839048
genomic: GTTTGGGGTTGTACAAGATGCTGATCGCCTTGATGCAATTGGTGCAATTGgtaagttttg ... gttagttcagGAATAGCCCGTTGCTTTACTTTTGGTGGAAGTAGAAAAAGAGTGCTTCATG
EST: TTTGGGGTTGTACAAGATGCTGATCGCCTTGATGCAAATTGGTGCAATTG GAATAGCCCGTTGCTTTACTTTTGGTGGAAGTAGAAAAAGAGTGCTTCATGEST: gi|110415762|gb|EC981694.1|EC981694
genomic: TTTGGGGTTGTACAAGATGCTGATCGCCTTGATGCAA-TTGGTGCAATTGgtaagttttg ... gttagttcagGAATAGCCCGTTGCTTTACTTTTGGTGGAAGTAGAAAAAGAGTGCTTCATG
EST: GTTTGGGGTTGTACAAGATGCTGATCGCCTTGATGCAATTGGTGCAATTG GAATAGCCCGTTGCTTTACTTTTGGTGGAAGTAGAAAAAGAGTGCTTCATGEST: gi|37190640|gb|CF609989.1|CF609989
genomic: GTTTGGGGTTGTACAAGATGCTGATCGCCTTGATGCAATTGGTGCAATTGgtaagttttg ... gttagttcagGAATAGCCCGTTGCTTTACTTTTGGTGGAAGTAGAAAAAGAGTGCTTCATG
EST: GTTTGGGGTTGTACAAGATGCTGATCGCCTTGATGCAATTGGTGCAATTG GAATAGCCCGTTGCTTTACTTTTGGTGGAAGTAGAAAAAGAGTGCTTCATG
genomic: GTTTGGGGTTGTACAAGATGCTGATCGCCTTGATGCAATTGGTGCAATTGgtaagttttg ... gttagttcagGAATAGCCCGTTGCTTTACTTTTGGTGGAAGTAGAAAAAGAGTGCTTCATG
tgctttaatgaggggaacagagtttgcatttcctcaagttgtactgttagttcagGAATAGCCCGTTGCTTTACTTTTGGTGGAAGTAGAAAAAGAGTGCTTCATGATCCTGCCATTAAGCCGCGGTCAGATTTATCCAAGGAACAATACATGAA
ctttaat putative branch site (score: 4)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agaggtcactttcattcaacttcccagaatactgttactatatattgctttaatgaggggaacagagtttgcatttcctcaagttgtactgttagttcagGAATAGCCCGTTGCTTTACTTTTGGTGGAAGTAGAAAAAGAGTGCTTCATGATCCTGCCATTAAGCCGCGGTCAGATTTATCCAAGGAACAATACATGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - cattcaa
- - - - - - - - - -cttccca
- - - - - - - - - - - - - - - -ctgttac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaacaga