1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gattgaagtatggtgatcttttatttcatatatgtgctagtaagtttcttgttgtatcctaacccccacacatgcccatcacgatttggtgcctttgcagAGACATTTGTGCGTGCGGATGGAGCCTTTATTCCGTTTGCTGACGATTTTAACGTCTCCAACGTAACAACAACAGTTAAAGGTGTAGGTGAGATCGGTGA
species | Vitis vinifera |
transcript | Vv01s0011g01870.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTTCATCACAGATGATCTTTGGTATGGCATCTTTGCCGGAACAAACCCAG AGACATTTGTGCGTGCGGATGGAGCCTTTATTCCGTTTGCTGACGATTTTAEST: gi|71877615|gb|DT026670.1|DT026670
genomic: CTTCATCACAGATGATCTTTGGTATGGCATCTTTGCCGGAACAAACCCAGgtaatgtagt ... gcctttgcagAGACATTTGTGCGTGCGGATGGAGCCTTTATTCCGTTTGCTGACGATTTTA
EST: CTTCATCACAGATGATCTTTGGTATGGCATCTTTGCCGGAACAAACCCAG AGACATTTGTGCGTGCGGATGGAGCCTTTATTCCGTTTGCTGACGATTTTAEST: gi|110698544|gb|EE076162.1|EE076162
genomic: CTTCATCACAGATGATCTTTGGTATGGCATCTTTGCCGGAACAAACCCAGgtaatgtagt ... gcctttgcagAGACATTTGTGCGTGCGGATGGAGCCTTTATTCCGTTTGCTGACGATTTTA
EST: TCATCACAGATGATCTTTGGTATGGCATCTTTGCCGGAACAAACCCAG AGATC-TTTCTGCGTGCGGATGGAGCCTTTATTCCGTTTGCTGACGATTTT
genomic: TCATCACAGATGATCTTTGGTATGGCATCTTTGCCGGAACAAACCCAGgtaatgtagt ... gcctttgcagAGA-CATTTGTGCGTGCGGATGGAGCCTTTATTCCGTTTGCTGACGATTTT
ttcttgttgtatcctaacccccacacatgcccatcacgatttggtgcctttgcagAGACATTTGTGCGTGCGGATGGAGCCTTTATTCCGTTTGCTGACGATTTTAACGTCTCCAACGTAACAACAACAGTTAAAGGTGTAGGTGAGATCGGTGA
tcctaac putative branch site (score: 1)
tgccttt putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gattgaagtatggtgatcttttatttcatatatgtgctagtaagtttcttgttgtatcctaacccccacacatgcccatcacgatttggtgcctttgcagAGACATTTGTGCGTGCGGATGGAGCCTTTATTCCGTTTGCTGACGATTTTAACGTCTCCAACGTAACAACAACAGTTAAAGGTGTAGGTGAGATCGGTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - tggtgat
- - - - - - - - - - - - - - - tatgtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cccccac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cccatca