1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaagttttgatctcattctgtacaatttctctaggttattcataagtgattccatcatgcgtaatcatctcttgctccagGTCAATCTGTGTATCATCTCCACTTGCATGTACTAGGTGGGAGACAGATGAAATGGCCGCCTGGTTGAAGATTTGAATTG
species | Vitis vinifera |
transcript | Vv01s0011g01610.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AGGTGTTCTTGATGGGTTTCGTGTAGTCATCAATAGTGGTCCGGATGCCT GTCAATCTGTGTATCATCTCCACTTGCATGTACTAGGTGGGAGACAGATGAEST: gi|110389333|gb|EC954162.1|EC954162
genomic: AGGTGTTCTTGATGGGTTTCGTGTAGTCATCAATAGTGGTCCGGATGCCTgtaagttttg ... cttgctccagGTCAATCTGTGTATCATCTCCACTTGCATGTACTAGGTGGGAGACAGATGA
EST: AGGTGTTCTTGATGGGTTTCGTGTAGTCATCAATAGTGGTCCGGATGCCT GTCAATCTGTGTATCATCTCCACTTGCATGTACTAGGTGGGAGACAGATGAEST: gi|349818483|gb|FQ403118.1|FQ403118
genomic: AGGTGTTCTTGATGGGTTTCGTGTAGTCATCAATAGTGGTCCGGATGCCTgtaagttttg ... cttgctccagGTCAATCTGTGTATCATCTCCACTTGCATGTACTAGGTGGGAGACAGATGA
EST: AGGTGTTCTTGATGGGTTTCGTGTAGTCATCAATAGTGGTCCTGATGCCT GTCAATCTGTGTATCATCTCCACTTGCATGTACTAGGTGGGAGACAGATGAEST: gi|110384323|gb|EC948751.1|EC948751
genomic: AGGTGTTCTTGATGGGTTTCGTGTAGTCATCAATAGTGGTCCGGATGCCTgtaagttttg ... cttgctccagGTCAATCTGTGTATCATCTCCACTTGCATGTACTAGGTGGGAGACAGATGA
EST: AGGTGTTCTTGATGGGTTTCGTGTAGTCATCAATAGTGGTCCGGATGCCT GTCAATCTGTGTATCATCTCCACTTGCATGTACTAGGTGGGAGACAGATGAEST: gi|71867299|gb|DT016354.1|DT016354
genomic: AGGTGTTCTTGATGGGTTTCGTGTAGTCATCAATAGTGGTCCGGATGCCTgtaagttttg ... cttgctccagGTCAATCTGTGTATCATCTCCACTTGCATGTACTAGGTGGGAGACAGATGA
EST: AGGTGTTCTTGATGGGTTTCGTGTAGTCATCAATAGTGGTCCGGATGCCT GTCAATCTGTGTATCATCTCCACTTGCATGTACTAGGTGGGAGACAGATGAEST: gi|71867022|gb|DT016077.1|DT016077
genomic: AGGTGTTCTTGATGGGTTTCGTGTAGTCATCAATAGTGGTCCGGATGCCTgtaagttttg ... cttgctccagGTCAATCTGTGTATCATCTCCACTTGCATGTACTAGGTGGGAGACAGATGA
EST: AGGTGTTCTTGATGGGTTTCGTGTAGTCATCAATAGTGGTCCGGATGCCT GTCAATCTGTGTATCATCTCCACTTGCATGTACTAGGTGGGAGACAGATGAEST: gi|349818522|gb|FQ403157.1|FQ403157
genomic: AGGTGTTCTTGATGGGTTTCGTGTAGTCATCAATAGTGGTCCGGATGCCTgtaagttttg ... cttgctccagGTCAATCTGTGTATCATCTCCACTTGCATGTACTAGGTGGGAGACAGATGA
EST: AGGTGTTCTTGATGGGTTTCGTGTAGTCATCAATAGTGGTCCGGATGCCT GTCAATCTGTGTATCATCTCCACTTGCATGTACTAGGTGGGAGACAGATGAEST: gi|110379724|gb|EC944942.1|EC944942
genomic: AGGTGTTCTTGATGGGTTTCGTGTAGTCATCAATAGTGGTCCGGATGCCTgtaagttttg ... cttgctccagGTCAATCTGTGTATCATCTCCACTTGCATGTACTAGGTGGGAGACAGATGA
EST: AGGTGTTCTTGATGGGTTTCGTGTAGTCATCAATAGTGGTCCGGATGCCT GTCAATCTGTGTATCATCTCCACTTGCATGTACTAGGTGGGAGACAGATGA
genomic: AGGTGTTCTTGATGGGTTTCGTGTAGTCATCAATAGTGGTCCGGATGCCTgtaagttttg ... cttgctccagGTCAATCTGTGTATCATCTCCACTTGCATGTACTAGGTGGGAGACAGATGA
tttctctaggttattcataagtgattccatcatgcgtaatcatctcttgctccagGTCAATCTGTGTATCATCTCCACTTGCATGTACTAGGTGGGAGACAGATGAAATGGCCGCCTGGTTGAAGATTTGAATTG
tcatctcttgctcc CT-rich tract
ttattcataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttttgatctcattctgtacaatttctctaggttattcataagtgattccatcatgcgtaatcatctcttgctccagGTCAATCTGTGTATCATCTCCACTTGCATGTACTAGGTGGGAGACAGATGAAATGGCCGCCTGGTTGAAGATTTGAATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA