1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tttggacccataacattattcttctccattcatgagataatagagttgtttctgttggttttggcttctgtatgtctcatacacaaatactccattgcagGTGAAGACAACTTCAAAGGTGAAGAACCCAAGGCTGCTGAACCTACTGAG
species | Vitis vinifera |
transcript | Vv01s0011g00620.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GTTGAGAGACAACCTCACTCTCTGGACCTCTGATTTGCCTGAAGAAGGAG GTGAAGACAACTTCAAAGGEST: gi|351012160|gb|FQ426882.1|FQ426882
genomic: GTTGAGAGACAACCTCACTCTCTGGACCTCTGATTTGCCTGAAGATGGAGgtactgtatg ... tccattgcagGTGAAGACAACTTCAAAGG
EST: GTTGAGAGACAACCTCACTCTCTGGACCTCTGATTTGCCTGAAGATGGAG GTGAAGACAACTTCAAAGGTGAEST: gi|110373768|gb|EC938103.1|EC938103
genomic: GTTGAGAGACAACCTCACTCTCTGGACCTCTGATTTGCCTGAAGATGGAGgtactgtatg ... tccattgcagGTGAAGACAACTTCAAAGGTGA
EST: GTTGAGAGACAACCTCACTCTCTGGACCTCTGATTTGCCTGAAGATGGAG GTGAAGACAACTTCAAAGGTGAAGAACCCAAGGCTGCTGAACCTACTGAGEST: gi|351033251|gb|FQ462023.1|FQ462023
genomic: GTTGAGAGACAACCTCACTCTCTGGACCTCTGATTTGCCTGAAGATGGAGgtactgtatg ... tccattgcagGTGAAGACAACTTCAAAGGTGAAGAACCCAAGGCTGCTGAACCTACTGAG
EST: GTTGAGAGACAACCTCACTCTCTGGACCTCTGATTTGCCTGAAGATGGAA GTGAAGACAACTTCAAAGGTGAAEST: gi|352789764|gb|FQ478579.1|FQ478579
genomic: GTTGAGAGACAACCTCACTCTCTGGACCTCTGATTTGCCTGAAGATGGAGgtactgtatg ... tccattgcagGTGAAGACAACTTCAAAGGTGAA
EST: GTTGAGAGACAACCTCACTCTCTGGACCTCTGATTTGCCTGAAGATGGAG GTGAAGACAACTTEST: gi|351055188|gb|FQ440527.1|FQ440527
genomic: GTTGAGAGACAACCTCACTCTCTGGACCTCTGATTTGCCTGAAGATGGAGgtactgtatg ... tccattgcagGTGAAGACAACTT
EST: GTTGAGAGACAACCTCACTCTCTGGACCTCTGATTTGCCTGAAGATGGAG GTGAAGACAACTTCAAAGGTGAAGAACCCAAGGCT
genomic: GTTGAGAGACAACCTCACTCTCTGGACCTCTGATTTGCCTGAAGATGGAGgtactgtatg ... tccattgcagGTGAAGACAACTTCAAAGGTGAAGAACCCAAGGCT
ttgtttctgttggttttggcttctgtatgtctcatacacaaatactccattgcagGTGAAGACAACTTCAAAGGTGAAGAACCCAAGGCTGCTGAACCTACTGAG
ctccatt CT-rich tract
acaaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttggacccataacattattcttctccattcatgagataatagagttgtttctgttggttttggcttctgtatgtctcatacacaaatactccattgcagGTGAAGACAACTTCAAAGGTGAAGAACCCAAGGCTGCTGAACCTACTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - cccataa
- - - - - - - - - - - - -ccattca
- - - - - - - - - - - - - - - - - - - aatagag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggcttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtatgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catacac