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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgatgaacgagatggagtggcacaagcatatgccctggtttcggatgggtagtttaagagtttggttaagttgggtgacagttgagattatgatagcttcttgctcataactatttcttgatgcttcttctgcagCCCTGGAGCCATTTTTCAATGCTGCTGCTTCTCAGTTTGTTTTAGGCCATCAAATTCCCTTTTCCCTCTGGCTGTCATTGGCCCCTGTTGTTATTG

Basic information

species Vitis vinifera
transcript Vv01s0011g00600.t01
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|56409287|gb|CX017539.1|CX017539
EST:     TAATGTGTCATTTGCAGCGGTGGCTGTGTCATTTACCCACACTATCAAAG                         CCCTGGAGCCATTTTTCAATGCTGCTGCTTCTCAGTTTGTTTTAGGCCATC
genomic: TAATGTGTCATTTGCAGCGGTGGCTGTGTCATTTACCCACACTATCAAAGgtgatgaacg ... tcttctgcagCCCTGGAGCCATTTTTCAATGCTGCTGCTTCTCAGTTTGTTTTAGGCCATC
EST: gi|351034668|gb|FQ458025.1|FQ458025
EST:     TAATGTGTCATTTGCAGCGGTGGCTGTGTCATTTACCCACACTATCAAAG                         CCCTGGAGCCATTTTTCAATGCTGCTGCTTCTCAGTTTGTTTTAGGCCATC
genomic: TAATGTGTCATTTGCAGCGGTGGCTGTGTCATTTACCCACACTATCAAAGgtgatgaacg ... tcttctgcagCCCTGGAGCCATTTTTCAATGCTGCTGCTTCTCAGTTTGTTTTAGGCCATC
EST: gi|56409591|gb|CX017843.1|CX017843
EST:     TAATGTGTCATTTGCAGCGGTGGCTGTGTCATTTACCCACACTATCAAAG                         CCCTGGAGCCATTTTTCAATGCTGCTGCTTCTCAGTTTGTTTTAGGCCATC
genomic: TAATGTGTCATTTGCAGCGGTGGCTGTGTCATTTACCCACACTATCAAAGgtgatgaacg ... tcttctgcagCCCTGGAGCCATTTTTCAATGCTGCTGCTTCTCAGTTTGTTTTAGGCCATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttgagattatgatagcttcttgctcataactatttcttgatgcttcttctgcagCCCTGGAGCCATTTTTCAATGCTGCTGCTTCTCAGTTTGTTTTAGGCCATCAAATTCCCTTTTCCCTCTGGCTGTCATTGGCCCCTGTTGTTATTG
                                         tgcttcttct  CT-rich tract
                          ataactattt  TA-rich tract