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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcgggtggttcccttcctaattactaaatttcgattttagaacttgtttcttctgttcagtgctcaaatcaatatatacaaactgatgtatgttgggaactctacatgtactgaagtggctcatgacttttccccattgtatgcatgaatgattttatgtatttggaagttaacgatcgggtgactctgcttgcagGTGTTTGGGAAGAGCACATTGATTGGACTGGTCATAACTTTCTTTGCGGGTGTTTGCTTCTCTCTTTTTTCCCCAGCATTTAACCTTGCAACGAACGATC

Basic information

species Vitis vinifera
transcript Vv01s0011g00530.t01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0011g00530.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA02G12980.1 (Glycine max), 3'ss of exon 5
gcgggtggttcccttcctaattactaaatttcgattttagaacttgtttcttctgttcagtgctcaaatcaatatatacaaactgatgtatgttgggaactctacatgtactgaagtggctcatgacttttccccattgtatgcatgaatgattttatgtatttggaagttaacgatcgggtgactctgcttgcagGTGTTTGGGAAGAGCACATTGATTGGACTGGTCATAACTTTCTTTGCGGGTGTTTGCTTCTCTCTTTTTTCCCCAGCATTTAACCTTGCAACGAACGATC
                                                                                        | | |||| || | ||    |  |  ||||    |     |||        | |  | ||||||| | |||||  ||  | |  ||  |   || |  |   ||||||||||| ||||||||||| || |||||| |||  |||||||||||||| || |||||||||||||| || || |||||||| ||  | ||||| || || |
---------------------------------------------------------------------------------------tttttttggaaaatgtaacaatcatagagtgtaatacacaattt-------atttaaaagaatgatgtaatgtacatgataat--actcttctgttaaaccttttgcagGTGTTAGGGAAGAGCACTTTCATTGGATTGGCTATAACTTTCTTTGCTGGAGTTTGCTTCTCTCTATTCTCTCCAGCATTCAATTTGGCAACAAATGACC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcatgaatgattttatgtatttggaagttaacgatcgggtgactctgcttgcagGTGTTTGGGAAGAGCACATTGATTGGACTGGTCATAACTTTCTTTGCGGGTGTTTGCTTCTCTCTTTTTTCCCCAGCATTTAACCTTGCAACGAACGATC
                          agttaac  putative branch site (score: 3)
                                           ctctgctt  putative PPT
      aatgattttatgtatt  TA-rich tract