Sequence
atgc intronic sequence ATGC exonic sequencegtaaactttatgcatgctagaagctctccaaatctcaagtagtttggagacagctttcttaagtttacttgagataatttacttatggctacaacttacattaacaataggttcttaatactgaaactgtggcagTGGTTTTTGAGGGACCTAACTGGAATGCTTGGAGGAATTTTATTCACTTTTTACCAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0011g00500.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GRMZM5G846548_T01 (Zea mays), 3'ss of exon 5
gtaaactttatgcatgctagaagctctccaaatctcaagtagtttggagacagctttcttaagtttacttgagataatt-tacttatggctacaacttacattaacaataggttcttaatactgaaactgtggcagTGGTTTTTGAGGGACCTAACTGGAATGCTTGGAGGAATTTTATTCACTTTTTACCAG
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---------------------------------ttgttgaagttctt---ttccttttgttaggctatctaatatcgtaacattgatcccccccccccccccccctatttccctctaacgtatgcaattctggcagTGGTTTCTGAGGGACTTGACAGGAATGCTTGGAGGGATATTGTTCACCTTTTACCAG
upper sequence: Vv01s0011g00500.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA02G13010.1 (Glycine max), 3'ss of exon 1
gtaaactttatgcatgctagaagctctccaaatctcaagtagtttggagacagctttcttaagtttacttgagataatttacttatggctacaacttacattaacaataggttctt-aatactgaaactgtggc-agTGGTTTTTGAGGGACCTAACTGGAATGCTTGGAGGAATTTTATTCACTTTTTACCAG
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-----------------------------------ttttttctttttttttttttttttttagtct-tttgtgtttcttaggctgcaa-tgtgttatgtgtcgacagtaggatattgaactttgaaactgtttccagTGGTTTTTGAGGGATCTAACTGGTATGCTTGGAGGAATCTTATTCACATTTTACCAG
upper sequence: Vv01s0011g00500.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA01G07190.1 (Glycine max), 3'ss of exon 5
-----------------------gtaaactttatgcatgctagaagctctccaaatctcaagtagtttgg----agacagct----ttcttaagtttacttgagataa-tttacttat------------ggctacaac-----ttacattaacaataggttctt-aatactgaaactgtggc-agTGGTTTTTGAGGGACCTAACTGGAATGCTTGGAGGAATTTTATTCACTTTTTACCAG
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gtatcgtcaactagttataatttatatacttgagtaatgattgaaccccaatttgttagatggggcttgggagaagaagactcaagcctttatgtttttttttggtaaatttagtcttttgtgtttcttaggctggaatgtgttatgtgtcgacagtaggatattgaactttgaaactgtttccagTGGTTTTTGAGAGATCTAACTGGTATGCTTGGAGGAATCTTATTCACATTTTACCAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.acttatggctacaacttacattaacaataggttcttaatactgaaactgtggcagTGGTTTTTGAGGGACCTAACTGGAATGCTTGGAGGAATTTTATTCACTTTTTACCAG
ttacattaacaata TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaaactttatgcatgctagaagctctccaaatctcaagtagtttggagacagctttcttaagtttacttgagataatttacttatggctacaacttacattaacaataggttcttaatactgaaactgtggcagTGGTTTTTGAGGGACCTAACTGGAATGCTTGGAGGAATTTTATTCACTTTTTACCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA