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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattcattagtcattgcatcaagaatagaacccaaagggagagcaatataggagaaattagttgccctggttttgattagtatcttactactcttggtgggttttgcagCCTGAAACTCAGTTGGCGACAGGCAAATCCAAGAAGTCTCTGCGCGGTGGTGCTTCTACTCGAATTGCAATCTGATGATAGAGCTAGTAAACTCTTCAAG

Basic information

species Vitis vinifera
transcript Vv01s0010g03380.t01
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351013781|gb|FQ433933.1|FQ433933
EST:     GCCATATCGAGTTGATTTTGTCTGAAAAGGAAGAACCTGTTAAAAAGGAG                         CCTGAAACTCAGTTGGCAACAGGCAAATCCAAGAAGTCTCTGCGCGGTGGT
genomic: GCCATATTGAGTTGATTTTGTCTGAAAAGGAAGAACCTGTTAAAAAGGAGgtaattcatt ... ggttttgcagCCTGAAACTCAGTTGGCGACAGGCAAATCCAAGAAGTCTCTGCGCGGTGGT
EST: gi|110397843|gb|EC963779.1|EC963779
EST:     GCCATATCGAGTTGATTTTGTCTGAAAAGGAAGAACCTGTTAAAAAGGAG                         CCTGAAACTCAGTTGGCGACAGGCAAATCCAAGAAGTCTCTGCGCGGTGGT
genomic: GCCATATTGAGTTGATTTTGTCTGAAAAGGAAGAACCTGTTAAAAAGGAGgtaattcatt ... ggttttgcagCCTGAAACTCAGTTGGCGACAGGCAAATCCAAGAAGTCTCTGCGCGGTGGT
EST: gi|110385986|gb|EC950553.1|EC950553
EST:     GCCATATCGAGTTGATTTTGTCTGAAAAGGAAGAACCTGTTAAAAAGGAG                         CCTGAAACTCAGTTGGCGACAGGCAAATCCAAGAAGTCTCTGCGCGGTGGT
genomic: GCCATATTGAGTTGATTTTGTCTGAAAAGGAAGAACCTGTTAAAAAGGAGgtaattcatt ... ggttttgcagCCTGAAACTCAGTTGGCGACAGGCAAATCCAAGAAGTCTCTGCGCGGTGGT
EST: gi|110376461|gb|EC941526.1|EC941526
EST:     GCCATATCGAGTTGATTTTGTCTGAAAAGGAAGAACCTGTTAAAAAGGAG                         CCTGAAACTCAGTTGGCGACAGGCAAATCCAAGAAGTCTCTGCGCGGTGGT
genomic: GCCATATTGAGTTGATTTTGTCTGAAAAGGAAGAACCTGTTAAAAAGGAGgtaattcatt ... ggttttgcagCCTGAAACTCAGTTGGCGACAGGCAAATCCAAGAAGTCTCTGCGCGGTGGT
EST: gi|110378218|gb|EC943338.1|EC943338
EST:     GCCATATCGAGTTGATTTTGTCTGAAAAGGAAGAACCTGTTAAAAAGGAG                         CCTGAAACTCAGTTGGCGACAGGCAAATCCAAGAAGTCTCTGCGCGGTGGT
genomic: GCCATATTGAGTTGATTTTGTCTGAAAAGGAAGAACCTGTTAAAAAGGAGgtaattcatt ... ggttttgcagCCTGAAACTCAGTTGGCGACAGGCAAATCCAAGAAGTCTCTGCGCGGTGGT
EST: gi|110688549|gb|EE067229.1|EE067229
EST:     GCCATATCGAGTTGATTTTGTCTGAAAAGGAAGAACCTGTTAAAAAGGAG                         CCTGAAACTCAGTTGGCGACAGGCAAATCCAAGAAGTCTCTGCGCGGTGGT
genomic: GCCATATTGAGTTGATTTTGTCTGAAAAGGAAGAACCTGTTAAAAAGGAGgtaattcatt ... ggttttgcagCCTGAAACTCAGTTGGCGACAGGCAAATCCAAGAAGTCTCTGCGCGGTGGT
EST: gi|110692078|gb|EE070908.1|EE070908
EST:     GCCATATCGAGTTGATTTTGTCTGAAAAGGAAGAACCTGTTAAAAAGGAG                         CCTGAAACTCAGTTGGCGACAGGCAAATCCAAGAAGTCTCTGCGCGGTGGT
genomic: GCCATATTGAGTTGATTTTGTCTGAAAAGGAAGAACCTGTTAAAAAGGAGgtaattcatt ... ggttttgcagCCTGAAACTCAGTTGGCGACAGGCAAATCCAAGAAGTCTCTGCGCGGTGGT
EST: gi|110423054|gb|EC989389.1|EC989389
EST:     GCCATATTGAGTTGATTTTGTCTGAAAAGGAAGAACCTGTTAAAAAGGAG                         CCTGAAACTCAGTTGGCGACAGGCAAATCCAAGAAGTCTCTGCGCGGTGGT
genomic: GCCATATTGAGTTGATTTTGTCTGAAAAGGAAGAACCTGTTAAAAAGGAGgtaattcatt ... ggttttgcagCCTGAAACTCAGTTGGCGACAGGCAAATCCAAGAAGTCTCTGCGCGGTGGT
EST: gi|110689601|gb|EE065966.1|EE065966
EST:     GCCATATCGAGTTGATTTTGTCTGAAAAGGAAGAACCTGTTAAAAAGGAG                         CCTGAAACTCAGTTGGCGACAGGCAAATCCAAGAAGTCTCTGCGCGGTGGT
genomic: GCCATATTGAGTTGATTTTGTCTGAAAAGGAAGAACCTGTTAAAAAGGAGgtaattcatt ... ggttttgcagCCTGAAACTCAGTTGGCGACAGGCAAATCCAAGAAGTCTCTGCGCGGTGGT
EST: gi|71869773|gb|DT018828.1|DT018828
EST:     GCCATATCGAGTTGATTTTGTCTGAGAAGGAAGAACCTGTTAAAAAGGAG                         CCTGAAACTCAGTTGGCGACAGGCAAATCCAAGAAGTCTCTGCGCGGTGGT
genomic: GCCATATTGAGTTGATTTTGTCTGAAAAGGAAGAACCTGTTAAAAAGGAGgtaattcatt ... ggttttgcagCCTGAAACTCAGTTGGCGACAGGCAAATCCAAGAAGTCTCTGCGCGGTGGT
EST: gi|110689920|gb|EE066564.1|EE066564
EST:     GCCATATCGAGTTGATTTTGTCTGAAAAGGAAGAACCTGTTAAAAAGGAG                         CCTGAAACTCAGTTGGCGACAGGCAAATCCAAGAAGTCTCTGCGCGGTGGT
genomic: GCCATATTGAGTTGATTTTGTCTGAAAAGGAAGAACCTGTTAAAAAGGAGgtaattcatt ... ggttttgcagCCTGAAACTCAGTTGGCGACAGGCAAATCCAAGAAGTCTCTGCGCGGTGGT
EST: gi|71879021|gb|DT028076.1|DT028076
EST:     GCCATATCGAGTTGATTTTGTCTGAAAAGGAAGAACCTGTTAAAAAGGAG                         CCTGAAACTCAGTTGGCGACAGGCAAATCCAAGAAGTCTCTGCGCGGTGGT
genomic: GCCATATTGAGTTGATTTTGTCTGAAAAGGAAGAACCTGTTAAAAAGGAGgtaattcatt ... ggttttgcagCCTGAAACTCAGTTGGCGACAGGCAAATCCAAGAAGTCTCTGCGCGGTGGT
EST: gi|110715617|gb|EE093874.1|EE093874
EST:     GCCATATCGAGTTGATTTTGTCTGAAAAGGAAGAACCTGTTAAAAAGGAG                         CCTGAAACTCAGTTGGCGACAGGCAAATCCAAGAAGTCTCTGCGCGGTGGT
genomic: GCCATATTGAGTTGATTTTGTCTGAAAAGGAAGAACCTGTTAAAAAGGAGgtaattcatt ... ggttttgcagCCTGAAACTCAGTTGGCGACAGGCAAATCCAAGAAGTCTCTGCGCGGTGGT
EST: gi|110419782|gb|EC986031.1|EC986031
EST:     GCCATATTGAGTTGATTTTGTCTGAAAAGGAAGAACCTGTTAAAAAGGAG                         CCTGAAACTCAGTTGGCGACAGGCAAATCCAAGAAGTCTCTGCGCGGTGGT
genomic: GCCATATTGAGTTGATTTTGTCTGAAAAGGAAGAACCTGTTAAAAAGGAGgtaattcatt ... ggttttgcagCCTGAAACTCAGTTGGCGACAGGCAAATCCAAGAAGTCTCTGCGCGGTGGT
EST: gi|34416764|gb|CF415518.1|CF415518
EST:     GCCATATCGAGTTGATTTTGTCTGAAAAGGAAGAACCTGTTAAAAAGGAG                         CCTGAAACTCAGTTGGCGACAGGCAAATCCAAGAAGTCTCTGCGCGGTGGT
genomic: GCCATATTGAGTTGATTTTGTCTGAAAAGGAAGAACCTGTTAAAAAGGAGgtaattcatt ... ggttttgcagCCTGAAACTCAGTTGGCGACAGGCAAATCCAAGAAGTCTCTGCGCGGTGGT
EST: gi|110717067|gb|EE092597.1|EE092597
EST:     GCCATATTGAGTTGATTTTGTCTGAAAAGGAAGAACCTGTTAAAAAGGAG                         CCTGAAACTCAGTTGGCGACAGGCAAATCCAAGAAGTCTCTGCGCGGTGGT
genomic: GCCATATTGAGTTGATTTTGTCTGAAAAGGAAGAACCTGTTAAAAAGGAGgtaattcatt ... ggttttgcagCCTGAAACTCAGTTGGCGACAGGCAAATCCAAGAAGTCTCTGCGCGGTGGT
EST: gi|351024796|gb|FQ430621.1|FQ430621
EST:     GCCATATCGAGTTGATTTTGTCTGAAAAGGAAGAACCTGTTAAAAAGGAG                         CCTGAAACTCAGTTGGCAACAGGCAAATCCAAGAAGTCTCTGCGCGGTGGT
genomic: GCCATATTGAGTTGATTTTGTCTGAAAAGGAAGAACCTGTTAAAAAGGAGgtaattcatt ... ggttttgcagCCTGAAACTCAGTTGGCGACAGGCAAATCCAAGAAGTCTCTGCGCGGTGGT
EST: gi|110374693|gb|EC939616.1|EC939616
EST:     GCCATATCGAGTTGATTTTGTCTGAAAAGGAAGAACCTGTTAAAAAGGAG                         CCTGAAACTCAGTTGGCGACAGGCAAATCCAAGAAGTCTCTGCGCGGTGGT
genomic: GCCATATTGAGTTGATTTTGTCTGAAAAGGAAGAACCTGTTAAAAAGGAGgtaattcatt ... ggttttgcagCCTGAAACTCAGTTGGCGACAGGCAAATCCAAGAAGTCTCTGCGCGGTGGT
EST: gi|110387423|gb|EC952086.1|EC952086
EST:     GCCATATCGAGTTGATTTTGTCTGAAAAGGAAGAACCTGTTAAAAAGGAG                         CCTGAAACTCAGTTGGCGACAGGCAAATCCAAGAAGTCTCTGCGCGGTGGT
genomic: GCCATATTGAGTTGATTTTGTCTGAAAAGGAAGAACCTGTTAAAAAGGAGgtaattcatt ... ggttttgcagCCTGAAACTCAGTTGGCGACAGGCAAATCCAAGAAGTCTCTGCGCGGTGGT
EST: gi|110391452|gb|EC956429.1|EC956429
EST:     GCCATATCGAGTTGATTTTGTCTGAAAAGGAAGAACCTGTTAAAAAGGAG                         CCTGAAACTCAGTTGGCGACAGGCAAATCCAAGAAGTCTCTGCGCGGTGGT
genomic: GCCATATTGAGTTGATTTTGTCTGAAAAGGAAGAACCTGTTAAAAAGGAGgtaattcatt ... ggttttgcagCCTGAAACTCAGTTGGCGACAGGCAAATCCAAGAAGTCTCTGCGCGGTGGT
EST: gi|352787033|gb|FQ476066.1|FQ476066
EST:     GCCATATCGAGTTGATTTTGTCTGAAAAGGAAGAACCTGTTAAAAAGGAG                         CCTGAAACTCAGTTGGCAACAGGCAAATCCAAGAAGTCTCTGCGCGGTGGT
genomic: GCCATATTGAGTTGATTTTGTCTGAAAAGGAAGAACCTGTTAAAAAGGAGgtaattcatt ... ggttttgcagCCTGAAACTCAGTTGGCGACAGGCAAATCCAAGAAGTCTCTGCGCGGTGGT
EST: gi|56409601|gb|CX017853.1|CX017853
EST:     GCCATATTGAGTTGATTTTGTCTGAAAAGGAAGAACCTGTTAAAAAGGAG                         CCTGAAACTCAGTTGGCGACAGGCAAATCCAAGAAGTCTCTGCGCGGTGGT
genomic: GCCATATTGAGTTGATTTTGTCTGAAAAGGAAGAACCTGTTAAAAAGGAGgtaattcatt ... ggttttgcagCCTGAAACTCAGTTGGCGACAGGCAAATCCAAGAAGTCTCTGCGCGGTGGT
EST: gi|110372343|gb|EC936500.1|EC936500
EST:     GCCATATCGAGTTGATTTTGTCTGAAAAGGAAGAACCTGTTAAAAAGGAG                         CCTGAAACTCAGTTGGCGACAGGCAAATCCAAGAAGTCTCTGCGCGGTGGT
genomic: GCCATATTGAGTTGATTTTGTCTGAAAAGGAAGAACCTGTTAAAAAGGAGgtaattcatt ... ggttttgcagCCTGAAACTCAGTTGGCGACAGGCAAATCCAAGAAGTCTCTGCGCGGTGGT
EST: gi|110694415|gb|EE071499.1|EE071499
EST:     GCCATATCGAGTTGATTTTGTCTGAAAAGGAAGAACCTGTTAAAAAGGAG                         CCTGAAACTCAGTTGGCGACAGGCAAATCCAAGAAGTCTCTGCGCGGTGGT
genomic: GCCATATTGAGTTGATTTTGTCTGAAAAGGAAGAACCTGTTAAAAAGGAGgtaattcatt ... ggttttgcagCCTGAAACTCAGTTGGCGACAGGCAAATCCAAGAAGTCTCTGCGCGGTGGT
EST: gi|71873227|gb|DT022282.1|DT022282
EST:     GCCATATCGAGTTGATTTTGTCTGAAAAGGAAGAACCTGTTAAAAAGGAG                         CCTGAAACTCAGTTGGCGACAGGCAAATCCAAGAAGTCTCTGCGCGGTGGT
genomic: GCCATATTGAGTTGATTTTGTCTGAAAAGGAAGAACCTGTTAAAAAGGAGgtaattcatt ... ggttttgcagCCTGAAACTCAGTTGGCGACAGGCAAATCCAAGAAGTCTCTGCGCGGTGGT
EST: gi|110705483|gb|EE082385.1|EE082385
EST:     GCCATATTGAGTTGATTTTGTCTGAAAAGGAAGAACCTGTTAAAAAGGAG                         CCTGAAACTCAGTTGGCGACAGGCAAATCCAAGAAGTCTCTGCGCGGTGGT
genomic: GCCATATTGAGTTGATTTTGTCTGAAAAGGAAGAACCTGTTAAAAAGGAGgtaattcatt ... ggttttgcagCCTGAAACTCAGTTGGCGACAGGCAAATCCAAGAAGTCTCTGCGCGGTGGT
EST: gi|77579783|gb|DV218769.1|DV218769
EST:     GCCATATCGAGTTGATTTTGTCTGAAAAGGAAGAACCTGTTAAAAAGGAG                         CCTGAAACTCAGTTGGCGACAGGCAAATCCAAGAAGTCTCTGCGCGGTGGT
genomic: GCCATATTGAGTTGATTTTGTCTGAAAAGGAAGAACCTGTTAAAAAGGAGgtaattcatt ... ggttttgcagCCTGAAACTCAGTTGGCGACAGGCAAATCCAAGAAGTCTCTGCGCGGTGGT
EST: gi|110375254|gb|EC940222.1|EC940222
EST:     GCCATATCGAGTTGATTTTGTCTGAAAAGGAAGAACCTGTTAAAAAGGAG                         CCTGAAACTCAGTTGGCGACAGGCAAATCCAAGAAGTCTCTGCGCGGTGGT
genomic: GCCATATTGAGTTGATTTTGTCTGAAAAGGAAGAACCTGTTAAAAAGGAGgtaattcatt ... ggttttgcagCCTGAAACTCAGTTGGCGACAGGCAAATCCAAGAAGTCTCTGCGCGGTGGT
EST: gi|110691990|gb|EE070724.1|EE070724
EST:     GCCATATCGAGTTGATTTTGTCTGAAAAGGAAGAACCTGTTAAAAAGGAG                         CCTGAAACTCAGTTGGCGACAGGCAAATCCAAGAAGTCTCTGCGCGGTGGT
genomic: GCCATATTGAGTTGATTTTGTCTGAAAAGGAAGAACCTGTTAAAAAGGAGgtaattcatt ... ggttttgcagCCTGAAACTCAGTTGGCGACAGGCAAATCCAAGAAGTCTCTGCGCGGTGGT
EST: gi|110389306|gb|EC954132.1|EC954132
EST:     GCCATATCGAGTTGATTTTGTCTGAAAAGGAAGAACCTGTTAAAAAGGAG                         CCTGAAACTCAGTTGGCGACAGGCAAATCCAAGAAGTCTCTGCGCGGTGGT
genomic: GCCATATTGAGTTGATTTTGTCTGAAAAGGAAGAACCTGTTAAAAAGGAGgtaattcatt ... ggttttgcagCCTGAAACTCAGTTGGCGACAGGCAAATCCAAGAAGTCTCTGCGCGGTGGT
EST: gi|110715297|gb|EE093186.1|EE093186
EST:     GCCATATTGAGTTGATTTTGTCTGAAAAGGAAGAACCTGTTAAAAAGGAG                         CCTGAAACTCAGTTGGCGACAGGCAAATCCAAGAAGTCTCTGCGCGGTGGT
genomic: GCCATATTGAGTTGATTTTGTCTGAAAAGGAAGAACCTGTTAAAAAGGAGgtaattcatt ... ggttttgcagCCTGAAACTCAGTTGGCGACAGGCAAATCCAAGAAGTCTCTGCGCGGTGGT
EST: gi|351013783|gb|FQ433935.1|FQ433935
EST:     GCCATATCGAGTTGATTTTGTCTGAAAAGGAAGAACCTGTTAAAAAGGAG                         CCTGAAACTCAGTTGGCAACAGGCAAATCCAAGAAGTCTCTGCGCGGTGGT
genomic: GCCATATTGAGTTGATTTTGTCTGAAAAGGAAGAACCTGTTAAAAAGGAGgtaattcatt ... ggttttgcagCCTGAAACTCAGTTGGCGACAGGCAAATCCAAGAAGTCTCTGCGCGGTGGT
EST: gi|110716791|gb|EE092082.1|EE092082
EST:     GCCATATTGAGTTGATTTTGTCTGAAAAGGAAGAACCTGTTAAAAAGGAG                         CCTGAAACTCAGTTGGCGACAGGCAAATCCAAGAAGTCTCTGCGCGGTGGT
genomic: GCCATATTGAGTTGATTTTGTCTGAAAAGGAAGAACCTGTTAAAAAGGAGgtaattcatt ... ggttttgcagCCTGAAACTCAGTTGGCGACAGGCAAATCCAAGAAGTCTCTGCGCGGTGGT
EST: gi|110696430|gb|EE072550.1|EE072550
EST:     GCCATATCGAGTTGATTTTGTCTGAAAAGGAAGAACCTGTTAAAAAGGAG                         CCTGAAACTCAGTTGGCGACAGGCAAATCCAAGAAGTCTCTGCGCGGTGGT
genomic: GCCATATTGAGTTGATTTTGTCTGAAAAGGAAGAACCTGTTAAAAAGGAGgtaattcatt ... ggttttgcagCCTGAAACTCAGTTGGCGACAGGCAAATCCAAGAAGTCTCTGCGCGGTGGT
EST: gi|30130595|gb|CB915934.1|CB915934
EST:     GCCATATCGAGTTGATTTTGTCTGAAAAGGAAGAACCTGTTAAAAAGGAG                         CCTGAAACTCAGTTGGCGACAGGCAAATCCAAGAAGTCTCTGCGCGGTGGT
genomic: GCCATATTGAGTTGATTTTGTCTGAAAAGGAAGAACCTGTTAAAAAGGAGgtaattcatt ... ggttttgcagCCTGAAACTCAGTTGGCGACAGGCAAATCCAAGAAGTCTCTGCGCGGTGGT
EST: gi|110701152|gb|EE078432.1|EE078432
EST:     GCCATATTGAGTTGATTTTGTCTGAAAAGGAAGAACCTGTTAAAAAGGAG                         CCTGAAACTCAGTTGGCGACAGGCAAATCCAAGAAGTCTCTGCGCGGTGGT
genomic: GCCATATTGAGTTGATTTTGTCTGAAAAGGAAGAACCTGTTAAAAAGGAGgtaattcatt ... ggttttgcagCCTGAAACTCAGTTGGCGACAGGCAAATCCAAGAAGTCTCTGCGCGGTGGT
EST: gi|110725494|gb|EE102063.1|EE102063
EST:     GCCATATTGAGTTGATTTTGTCTGAAAAGGAAGAACCTGTTAAAAAGGAG                         CCTGAAACTCAGTTGGCGACAGGCAAATCCAAGAAGTCTCTGCGCGGTGGT
genomic: GCCATATTGAGTTGATTTTGTCTGAAAAGGAAGAACCTGTTAAAAAGGAGgtaattcatt ... ggttttgcagCCTGAAACTCAGTTGGCGACAGGCAAATCCAAGAAGTCTCTGCGCGGTGGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaattagttgccctggttttgattagtatcttactactcttggtgggttttgcagCCTGAAACTCAGTTGGCGACAGGCAAATCCAAGAAGTCTCTGCGCGGTGGTGCTTCTACTCGAATTGCAATCTGATGATAGAGCTAGTAAACTCTTCAAG
                           atcttac  putative branch site (score: 3)
                ttttgatta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaattcattagtcattgcatcaagaatagaacccaaagggagagcaatataggagaaattagttgccctggttttgattagtatcttactactcttggtgggttttgcagCCTGAAACTCAGTTGGCGACAGGCAAATCCAAGAAGTCTCTGCGCGGTGGTGCTTCTACTCGAATTGCAATCTGATGATAGAGCTAGTAAACTCTTCAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT