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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggaataaatccccccacatccatgttacaggcatcatattaggctattaaatatccttcacaatagaacacgctaatatcttaaatcttggatttgtgcagCTCCCTTGTATCATGTGGCTTGCTATTTACAAACCCAGAAGGTTTAGCTTATCATGGTTTGCAAATTGG

Basic information

species Vitis vinifera
transcript Vv01s0010g02700.t01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0010g02700.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: EFJ10950 (Selaginella moellendorffii), 3'ss of exon 6
gtaaggaataaatccccccacatccatgttacaggcatcatattaggctattaaatatccttcacaatagaacacgctaatatcttaaatct---tggatttgt--gcagCTCCCTTGTATCATGTGGCTTGCTATTTACAAACCCAGAAGGTTTAGCTTATCATGGTTTGCAAATTGG
                                          | ||    |  ||| |  ||     | |   |      |  |||||   |   || |||  |   |||||||| ||||| |||||||| ||| ||||||||||||||   || ||  | || ||| | ||||| |||
-----------------------------------------gtaagttcctctaattttttttgttttggttgatttctttggcttaaccttctttgcattaatccacagCTCCCGTGTATTATGTGGCTGGCTGTTTACAAACCCAGAGTTTTCAGTCTTTCGTGGATGGCAAACTGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaaatatccttcacaatagaacacgctaatatcttaaatcttggatttgtgcagCTCCCTTGTATCATGTGGCTTGCTATTTACAAACCCAGAAGGTTTAGCTTATCATGGTTTGCAAATTGG
                        cgctaat  putative branch site (score: 3)
                           taatatcttaaatctt  TA-rich tract