1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtagtgttctctgagccctttctttctcttaatttgaacaattctttttttccccttcattggaattaagactcactcttggtattatgcatatatttgcttatctgaagCTTAATCGGGATACATGGGCAAATGAAGCTGTGGCGCAAACTATTAGTACAAATTTCATCTTCTGGCAG
species | Vitis vinifera |
transcript | Vv01s0010g02050.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AATGGCTCCTGGTAAACTTGCAATCCACCACAGAATTCAGCTCACATATG CTTAATCGGGATACATGGGCAAATGAAGCTGTGGCGCAAACTATTAGTACAEST: gi|71859632|gb|DT008687.1|DT008687
genomic: AATGGCTCCTGGTAAACTTGCAATCCACCACAGAATTCAGCTCACATATGgtagtgttct ... ttatctgaagCTTAATCGGGATACATGGGCAAATGAAGCTGTGGCGCAAACTATTAGTACA
EST: AATGGCTCCTGGTAAACTTGCAATCCACCACAGAATTCAGCTCACATATG CTTAATCGGGATACATGGGCAAATGAAGCTGTGGCGCAAACTATTAGTACAEST: gi|110732429|gb|EE107710.1|EE107710
genomic: AATGGCTCCTGGTAAACTTGCAATCCACCACAGAATTCAGCTCACATATGgtagtgttct ... ttatctgaagCTTAATCGGGATACATGGGCAAATGAAGCTGTGGCGCAAACTATTAGTACA
EST: AATGGCTCCTGGTAAACTTGCAATCCACCACAGAATTCAGCTCACATATG CTTAATCNGGATACATGGGCCAATGAAGCTGTGGCGCAAACTATTAGTACA
genomic: AATGGCTCCTGGTAAACTTGCAATCCACCACAGAATTCAGCTCACATATGgtagtgttct ... ttatctgaagCTTAATCGGGATACATGGGCAAATGAAGCTGTGGCGCAAACTATTAGTACA
ttcattggaattaagactcactcttggtattatgcatatatttgcttatctgaagCTTAATCGGGATACATGGGCAAATGAAGCTGTGGCGCAAACTATTAGTACAAATTTCATCTTCTGGCAG
gactcac putative branch site (score: 2)
tttgctt putative PPT
tattatgcatatattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagtgttctctgagccctttctttctcttaatttgaacaattctttttttccccttcattggaattaagactcactcttggtattatgcatatatttgcttatctgaagCTTAATCGGGATACATGGGCAAATGAAGCTGTGGCGCAAACTATTAGTACAAATTTCATCTTCTGGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG