1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tgaaccatatattttattatgttattctaaatggttggaacttgtgcctgctgtggaaagattatagacatgcaatagttgctgatgttttctcgtgtagCTTGCAGACTTGACCGGAGAACTGATGAGGTTGGCAATTGGTCGAATATCAGATGGTGAACTTGAATATGCAGAGAAGATATGCGGGTTTGTTCGAGATA
species | Vitis vinifera |
transcript | Vv01s0010g00580.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ATCCATCTCATCAACCTTTGCAGATTAATATCCTTGACTATCTATTGGGG CTTGCAGACTTGACCGGAGAACTGATGAGGTTGGCAATTGGTCGAATATCAEST: gi|110361414|gb|EC924882.1|EC924882
genomic: ATCCATCTCATCAACCTTTGCAGATTAATATCCTTGACTATCTATTGGGGgtaactgcct ... tctcgtgtagCTTGCAGACTTGACCGGAGAACTGATGAGGTTGGCAATTGGTCGAATATCA
EST: ATCCATCTCATCAACCTTTGCAGATTAATATCCTTGACTATCTATTGGGG CTTGCAGACTTGACCGGAGAACTGATGAGGTTGGCAATTGGTTGAATATCAEST: gi|26257414|gb|CA808477.1|CA808477
genomic: ATCCATCTCATCAACCTTTGCAGATTAATATCCTTGACTATCTATTGGGGgtaactgcct ... tctcgtgtagCTTGCAGACTTGACCGGAGAACTGATGAGGTTGGCAATTGGTCGAATATCA
EST: ATCCATCTC-TCAACCTTTGCAGATTAATATCCCTGACTATCTATTGGGG CTTGCAGACTTGACCGGGGAACTGATGAGGTTGGCAATTGGTCGAATATCAEST: gi|349830142|gb|FQ420402.1|FQ420402
genomic: ATCCATCTCATCAACCTTTGCAGATTAATATCCTTGACTATCTATTGGGGgtaactgcct ... tctcgtgtagCTTGCAGACTTGACCGGAGAACTGATGAGGTTGGCAATTGGTCGAATATCA
EST: ATCCATCTCATCAACCTTTGCAGATTAATATCCTTGACTATCTATTGGGG CTTGCAGACTTGACCGGAGAACTGATGAGGTTGGCAATTGGTCGAATATCAEST: gi|110363854|gb|EC927477.1|EC927477
genomic: ATCCATCTCATCAACCTTTGCAGATTAATATCCTTGACTATCTATTGGGGgtaactgcct ... tctcgtgtagCTTGCAGACTTGACCGGAGAACTGATGAGGTTGGCAATTGGTCGAATATCA
EST: ATCCATCTCATCAACCTTTGCAGATTAATATCCTTGACTATCTATTGGGG CTTGCAGACTTGACCGGAGAACTGATGAGGTTGGCAATTGGTCGAATATCAEST: gi|26257309|gb|CA808372.1|CA808372
genomic: ATCCATCTCATCAACCTTTGCAGATTAATATCCTTGACTATCTATTGGGGgtaactgcct ... tctcgtgtagCTTGCAGACTTGACCGGAGAACTGATGAGGTTGGCAATTGGTCGAATATCA
EST: ATCCATCTC-TCAACCTTTGCAGATTAATATCCCTGACTATCTATTGGGG CTTGCAGACTTGACCGGGGAACTGATGAGGTTGGCAATTGGTCGAATATCA
genomic: ATCCATCTCATCAACCTTTGCAGATTAATATCCTTGACTATCTATTGGGGgtaactgcct ... tctcgtgtagCTTGCAGACTTGACCGGAGAACTGATGAGGTTGGCAATTGGTCGAATATCA
gcctgctgtggaaagattatagacatgcaatagttgctgatgttttctcgtgtagCTTGCAGACTTGACCGGAGAACTGATGAGGTTGGCAATTGGTCGAATATCAGATGGTGAACTTGAATATGCAGAGAAGATATGCGGGTTTGTTCGAGATA
tgctgat putative branch site (score: 3)
tgttttctc CT-rich tract
aaagattata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgaaccatatattttattatgttattctaaatggttggaacttgtgcctgctgtggaaagattatagacatgcaatagttgctgatgttttctcgtgtagCTTGCAGACTTGACCGGAGAACTGATGAGGTTGGCAATTGGTCGAATATCAGATGGTGAACTTGAATATGCAGAGAAGATATGCGGGTTTGTTCGAGATA
- aaccata
- - - - - - - - - - - - - - - -tggttgg
- - - - - - - - - - - - - - - - - - - - - - - cctgctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - ggaaaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctgat