Sequence
atgc intronic sequence ATGC exonic sequence...ggctttcttcccttttctgttgactgaattttattatgagttagtgcataagcatgcatgtggccacttctcatccttgttctattatgacattattcagATCAGAAATTGCTTGGAGAGATGCAAAATATGCCCAAATATTTGAGTACTTATGGGAGGAGTATGAAGTCACACAACGTTTTGGGAACCTTGATTTCAAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0010g00520.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA01G06630.2 (Glycine max), 3'ss of exon 5
-------------------------------------------------------------------------ggctttcttcccttttctgttgactgaattttattatgagttagtgcataagcatgcatgtggccacttc-tcatccttgttctattatgacattattcagATCAGAAATTGCTTGGAGAGATGCAAAATATGCCCAAATATTTGAGTACTTATGGGAGGAGTATGAAGTCACACAACGTTTTGGGAACCTTGATTTCAAA
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gtattttatccctgttttagagaaatatgcatacggcaatgatgtaagaatatattgaaaatttaagattctagtatccctaaagatttcaaatatttgatttttagattcatttcatcctagagaata-gtgagaaaatttggttaatgtttttttattgtgg-attaattagATCAGAAATTGCTTGGAGGGATGCAAAGTATGCTCAAATATATGAGTATCTTAGGGAGGAGTATGAAGTTGCACAACGCTTTGGAAACCTGGATTTCAAA
upper sequence: Vv01s0010g00520.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA02G12560.1 (Glycine max), 3'ss of exon 5
-------------------------------------------------------------ggctttcttcccttttctgttgact----gaattttatt-atgagttagtgcataagcatgcatgtggccacttctcatccttgttctattatgacattattcagATCAGAAATTGCTTGGAGAGATGCAAAATATGCCCAAATATTTGAGTACTTATGGGAGGAGTATGAAGTCACACAACGTTTTGGGAACCTTGATTTCAAA
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gtattttatccttgttttagaaaaatacacatacggcagtgtaagaatatattgaaaatttaagattatagtaatccctaaagatttcaaatatttgatttatcaattcatttcatcctagactagtgagaaattttggttttttttttaattgtggattaatcagATCAGAAATTGCTTGGAGGGATGCAAAGTATGCTCAAATATATGAGTATCTTCGGGATGAGTATGAAGTTGCCCAACGCTTTGGAAACCTGGATTTCAAA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gcataagcatgcatgtggccacttctcatccttgttctattatgacattattcagATCAGAAATTGCTTGGAGAGATGCAAAATATGCCCAAATATTTGAGTACTTATGGGAGGAGTATGAAGTCACACAACGTTTTGGGAACCTTGATTTCAAA
tattatgacattatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ggctttcttcccttttctgttgactgaattttattatgagttagtgcataagcatgcatgtggccacttctcatccttgttctattatgacattattcagATCAGAAATTGCTTGGAGAGATGCAAAATATGCCCAAATATTTGAGTACTTATGGGAGGAGTATGAAGTCACACAACGTTTTGGGAACCTTGATTTCAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - -tcttccc
- - - - - - - - - - tgactga
- - - - - - - - - - - - - - - - - - - - - -gtgcata
- - - - - - - - - - - - - - - - - - - - - - - - - -gcatgca