Sequence
atgc intronic sequence ATGC exonic sequencegtataccataacccacctatctgtagtctgttgtatttgttatctcatccataaataaaaattgaacttttatttcttccaaaattttcagGAAAAGTAGTGGCTTTTCAAGGGGAGCTTCCATTTACAGGGGTGTCACAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s1291g00010.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA01G02760.1 (Glycine max), 3'ss of exon 6
gtataccataacccacctatctgtagtctgttgtatttgttatctcatccataaataaaaattgaacttttatttcttccaaaattttcagGAAAAGTAGTGGCTTTTCAAGGGGAGCTTCCATTTACAGGGGTGTCACAAG
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gtttgcttgagttgtcctattaaaattcta--gcattg--tacttc-tacatacgcagctactgaatattcggatttcc--attcttgcagGAAAAGTAGTGGTTTCTCCAGGGGAGCTTCCATATACAGAGGTGTTACAAG
upper sequence: Vv00s1291g00010.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA09G33240.1 (Glycine max), 3'ss of exon 6
gtataccataacccacctatctgtagtctgttgtatttgttatctcatccataaataaaaattgaacttttatttcttccaaaattttcagGAAAAGTAGTGGCTTTTCAAGGGGAGCTTCCATTTACAGGGGTGTCACAAG
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gtttgct-tgacttgccccatta-aatttttagcattg--tacttc-tacatatgcagctactgaaaatttggattttc--attcttgcagGAAAAGTAGTGGTTTCTCCAGGGGAGCTTCCATATACAGAGGTGTTACAAG
upper sequence: Vv00s1291g00010.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA08G38190.1 (Glycine max), 3'ss of exon 4
------------gtataccataacccacctatctgtagtctgttgtatttgttatctcatccataaataaaaattgaacttttatttcttccaaaattttcagGAAAAGTAGTGGCTTTTCAAGGGGAGCTTCCATTTACAGGGGTGTCACAAG
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tattgcatcactgcgaaggttaatttgcctatg-gtacccagttatacatatt-tagca-ccatatttcaatgctggaactaaagttgtatttgttcttgcagGAAAAGTAGTGGTTTTTCAAGGGGAGCTTCTGCTTACAGAGGTGTTACAAG
upper sequence: Vv00s1291g00010.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA18G29400.1 (Glycine max), 3'ss of exon 1
gtataccataacccacctatctgtagtctgttgtatttgttatctcatccataaataaaaattgaacttttatttcttccaaaattttcagGAAAAGTAGTGGCTTTTCAAGGGGAGCTTCCATTTACAGGGGTGTCACAAG
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----------gtttgcctgtgc-taccctgttatacatatt-tagca-ccatatttcaatgctgaaactaaagttgtatttgtcctttcagGAAAAGCAGTGGTTTTTCGAGGGGAGCTTCTGCTTACAGGGGTGTTACAAG
upper sequence: Vv00s1291g00010.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: AT5G65510.1 (Arabidopsis thaliana), 3'ss of exon 6
gtataccataacccacctatctgtagtctgttgtatttgttatctcatccataaataaaaattgaacttttatttcttccaaaattttcagGAAAAGTAGTGGCTTTTCAAGGGGAGCTTCCATTTACAGGGGTGTCACAAG-------------------------------------------------
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----gtgagaatcaaattaagatttacatat-atgttcttgatttcaaaattgga-atatttccaacttttggttaatgtaaatgtttcagGAAAAGTAGCGGTTTTTCGAGAGGAGCTTCAATATATAGAGGTGTCACAAGGCATCATCAACAAGGTCGCTGGCAAGCAAGAATCGGCCGTGTCGCAGGA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttgttatctcatccataaataaaaattgaacttttatttcttccaaaattttcagGAAAAGTAGTGGCTTTTCAAGGGGAGCTTCCATTTACAGGGGTGTCACAAG
ttttc CT-rich tract
ataaataaaaattgaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtataccataacccacctatctgtagtctgttgtatttgttatctcatccataaataaaaattgaacttttatttcttccaaaattttcagGAAAAGTAGTGGCTTTTCAAGGGGAGCTTCCATTTACAGGGGTGTCACAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT