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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaatcatatgtggaatatgcttagtctattgattagcggtctctgccattcctctgtcctcaatttatctttcttttggttgcaatgcagGCTGCAAAGTACATTGAGTATGATTCCTCTTTTGGTGAAGAAGAGAAGAAGCAGGCCAAAACTCTCAAGGTTACTTGCAACCTCAATAATGCGGCTTGCA

Basic information

species Vitis vinifera
transcript Vv00s0958g00020.t01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0958g00020.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA18G32830.1 (Glycine max), 3'ss of exon 9
gtaaaatcatatgtggaatatgcttagtctattgattagcggtctctgccattcctctgtcctcaatttatctttcttttggttgcaatgcagGCTGCAAAGTACATTGAGTATGATTCCTCTTTTGGTGAAGAAGAGAAGAAGCAGGCCAAAACTCTCAAGGTTACTTGCAACCTCAATAATGCGGCTTGCA-
 |||  | | ||  |  |||   || ||  | |   ||   ||   |||    | ||||     |||  |   ||           | || |||| |  |||||||| || ||||||||||| |||||||| || ||||| ||||||||||| ||  | |||||| | ||||| || || ||||| ||||||| 
-taatctaaaataggtcatacattt-gttcactttctacttgttgatgca--ccttctgatggtaatgaaaactt-----------actgtaggCCGTGAAGTACATAGAATATGATTCCTCCTTTGGTGAGGAGGAGAAAAAGCAGGCCAAGACCTTGAAGGTTGCCTGCAATCTGAACAATGCTGCTTGCAA

upper sequence: Vv00s0958g00020.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA08G46090.2 (Glycine max), 3'ss of exon 9
gtaaaatcatatgtggaatatgcttagtctattgattagcggtctctgccattcctctgtcctcaatttatctttcttttggttgcaatgcagGCTGCAAAGTACATTGAGTATGATTCCTCTTTTGGTGAAGAAGAGAAGAAGCAGGCCAAAACTCTCAAGGTTACTTGCAACCTCAATAATGCGGCTTGCA
            ||    ||   | ||  |||  |||  |  | ||| | ||     ||  |      |     |  |    |   | || |||||| ||||||||| || ||||||||||| || ||||| || ||||| ||||||||||| ||  | |||||| | ||||| || || ||||| |||||||
------------gtaatctaaaat-agattatacattt-cactttctac-atgttgatgcacctg--ctgatggtactgaaatcttactgtagGCTGTAAAGTACATAGAATATGATTCCTCATTCGGTGAGGAGGAGAAAAAGCAGGCCAAGACCTTGAAGGTTGCCTGCAATCTTAACAATGCTGCTTGCA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcggtctctgccattcctctgtcctcaatttatctttcttttggttgcaatgcagGCTGCAAAGTACATTGAGTATGATTCCTCTTTTGGTGAAGAAGAGAAGAAGCAGGCCAAAACTCTCAAGGTTACTTGCAACCTCAATAATGCGGCTTGCA
                                tctttcttttggtt  CT-rich tract
                          aatttatctttctttt  TA-rich tract