Sequence
atgc intronic sequence ATGC exonic sequencegtactacttgctttttcaagttttccaatgtcactttttccttgacagtgaaaaagaagtatgaattttttaaatcctattcctcatctgacagtgtattggttttgaccttagGAAGCTTCTTTCATGGGCATGGTTAACGTGTTTATTCTTTGTTCCAGAGATGATACTGAAATCATTGGCAAATACATTTCAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0581g00010.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA20G25100.1 (Glycine max), 3'ss of exon 15
gtactacttgctttttcaagttttccaatgtcactttttccttgacagtgaaaaagaagtatgaattttttaaatcctattcctcatctgacagtgtattggttttgaccttagGAAGCTTCTTTCATGGGCATGGTTAACGTGTTTATTCTTTGTTCCAGAGATGATACTGAAATCATTGGCAAATACATTTCAG
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-----gtatgtttccctttattgtccaaattcaatctattct-accggt--aaaagttgca-gagttttttatcagatattttatgcttgat----tgttcttatggaccttagGAAGCTTCTTTCATGGGCATGGTTGACGTGTTTATTCTTCATCCCTGAGTTGGTTTTAAAATCAGCAGCAAAAGCATTTCAG
upper sequence: Vv00s0581g00010.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA10G41940.2 (Glycine max), 3'ss of exon 14
gtactacttgctttttcaagttttccaatgtcactttttccttgacagtgaaaaagaagtatgaattttttaaatcctattcctcatctgacagtgtattggttttgaccttagGAAGCTTCTTTCATGGGCATGGTTAACGTGTTTATTCTTTGTTCCAGAGATGATACTGAAATCATTGGCAAATACATTTCAG
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-----gtatgtttccctttattgtccaagttcaatctattct--acc-tgtaaaagttgca-gagttttttatcagatattttatgcttgat----tattcttatggaccttagGAAACTTCTTTCATGGGCATGGTTGACGTGTTTATTCTTCATCCCTGAGTTGGTTTTAAAATCAGCAGCAAAAGCATTTCAG
upper sequence: Vv00s0581g00010.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: AT1G57600.1 (Arabidopsis thaliana), 3'ss of exon 14
gtactacttgctttttcaagttttccaatgtcactttttccttgacagtgaaaaagaagtatgaattttttaaatcctattcctcatctgacagtgtattggttttgaccttagGAAGCTTCTTTCATGGGCATGGTTAACGTGTTTATTCTTTGTTCCAGAGATGATACTGAAATCATTGGCAAATACATTTCAG
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---------gtaatcccttgccttcctatgattcctttgtgttg---------------tatgaatcattcgatgcaactttctcatatggttgactgctgtgtttgcaaccagGAAGCTTCTTTCATGGGCATGGTTAACATGTTTATTCTTCATGCCAGAAATGTTACTGAAATCAGCATCCAGTGCATATAAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|156737221|gb|EV241342.1|EV241342EST: ACATATGGG-TATAATTCACATTTGTTGCTGTATGGCATGACTTAGAGTG GAAGCTTCTTTCATGGGCATGGTAAACGTG-TTATTTCTTTGTTCCAGAGA
genomic: ACATATGGGTTAT-ATTCACATTTGTTGCTGTATGGCATGACTTAGAGTGgtactacttg ... ttgaccttagGAAGCTTCTTTCATGGGCATGGTTAACGTGTTTA-TTCTTTGTTCCAGAGA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tatgaattttttaaatcctattcctcatctgacagtgtattggttttgaccttagGAAGCTTCTTTCATGGGCATGGTTAACGTGTTTATTCTTTGTTCCAGAGATGATACTGAAATCATTGGCAAATACATTTCAG
ttttgac putative branch site (score: 3)
attttttaaatcctat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtactacttgctttttcaagttttccaatgtcactttttccttgacagtgaaaaagaagtatgaattttttaaatcctattcctcatctgacagtgtattggttttgaccttagGAAGCTTCTTTCATGGGCATGGTTAACGTGTTTATTCTTTGTTCCAGAGATGATACTGAAATCATTGGCAAATACATTTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG