1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...atcacacaccatttttccttatagatactgtaaatggctttgaaagtactaattgggtccatgtgactttttctttgctgtatttatgttgtctctgcagGATTCTTACTCTATCCAGAGTTTTGAGCGTGGTATTTCTGCACAAAATAATGGTGCCTTTGCATGGGAAATAATTCCG
species | Vitis vinifera |
transcript | Vv00s0531g00050.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTTGTGCAGAAATATGTGCTGATCAGCATACGATAACGAGAGAAGAACAG GATTCTTACTCTATCCAGAGTTTTGAGCGTGGTATTTCTGCACAAAATAATEST: gi|77586184|gb|DV222186.1|DV222186
genomic: TTTGTGCAGAAATATGTGCTGATCAGCATACGATAACGAGAGAAGAACAGgtagtagtct ... gtctctgcagGATTCTTACTCTATCCAGAGTTTTGAGCGTGGTATTTCTGCACAAAATAAT
EST: TTTGTGCAGAAATATGTGCTGATCAGCATACGATAACGAGAGAAGAACAG GATTCTTACTCTATCCAGAGTTTTGAGCGTGGTATTTCTGCACAAAATAATEST: gi|37190107|gb|CF609456.1|CF609456
genomic: TTTGTGCAGAAATATGTGCTGATCAGCATACGATAACGAGAGAAGAACAGgtagtagtct ... gtctctgcagGATTCTTACTCTATCCAGAGTTTTGAGCGTGGTATTTCTGCACAAAATAAT
EST: TTTGTGCAGAAATATGTGCTGATCAGCATACGATAACAAGAGAAGAACAG GATTCTTACTCTATCCAGAGTTTTGAGCGTGGTATTTCTGCACAAAATAATEST: gi|71877133|gb|DT026188.1|DT026188
genomic: TTTGTGCAGAAATATGTGCTGATCAGCATACGATAACGAGAGAAGAACAGgtagtagtct ... gtctctgcagGATTCTTACTCTATCCAGAGTTTTGAGCGTGGTATTTCTGCACAAAATAAT
EST: TTTGTGCAGAAATATGTGCTGATCAGCATACGATAACGAGAGAAGAACAG GATTCTTACTCTATCCAGAGTTTTGAGCGTGGTATTTCTGCACAAAATAATEST: gi|110376548|gb|EC941608.1|EC941608
genomic: TTTGTGCAGAAATATGTGCTGATCAGCATACGATAACGAGAGAAGAACAGgtagtagtct ... gtctctgcagGATTCTTACTCTATCCAGAGTTTTGAGCGTGGTATTTCTGCACAAAATAAT
EST: TTTGTGCAGAAATATGTGCTGATCAGCATACGATAACGAGAGAAGAACAG GATTCTTACTCTATCCAGAGTTTTGAGCGTGGTATTTCTGCACAAAATAATEST: gi|37186247|gb|CF605600.1|CF605600
genomic: TTTGTGCAGAAATATGTGCTGATCAGCATACGATAACGAGAGAAGAACAGgtagtagtct ... gtctctgcagGATTCTTACTCTATCCAGAGTTTTGAGCGTGGTATTTCTGCACAAAATAAT
EST: TTTGTGCAGAAATATGTGCTGATCAGCATACGATAACGAGAGAAGAACAG GATTCTTACTCTATCCAGAGTTTTGAGCGTGGTATTTCTGCACAAAATAAEST: gi|110395476|gb|EC961142.1|EC961142
genomic: TTTGTGCAGAAATATGTGCTGATCAGCATACGATAACGAGAGAAGAACAGgtagtagtct ... gtctctgcagGATTCTTACTCTATCCAGAGTTTTGAGCGTGGTATTTCTGCACAAAATAA
EST: TTTGTGCAGAAATATGTGCTGATCAGCATACGATAACGAGAGAAGAACAG GATTCTTACTCTATCCAGAGTTTTGAGCGTGGTATTTCTGCACAAAATAATEST: gi|110361851|gb|EC925352.1|EC925352
genomic: TTTGTGCAGAAATATGTGCTGATCAGCATACGATAACGAGAGAAGAACAGgtagtagtct ... gtctctgcagGATTCTTACTCTATCCAGAGTTTTGAGCGTGGTATTTCTGCACAAAATAAT
EST: TTTGTGCAGAAATATGTGCTGATCAGCATACGATAACGAGAGAAGAACAG GATTCTTACTCTATCCAGAGTTTTGAGCGTGGTATTTCTGCACAAAATAAT
genomic: TTTGTGCAGAAATATGTGCTGATCAGCATACGATAACGAGAGAAGAACAGgtagtagtct ... gtctctgcagGATTCTTACTCTATCCAGAGTTTTGAGCGTGGTATTTCTGCACAAAATAAT
gtactaattgggtccatgtgactttttctttgctgtatttatgttgtctctgcagGATTCTTACTCTATCCAGAGTTTTGAGCGTGGTATTTCTGCACAAAATAATGGTGCCTTTGCATGGGAAATAATTCCG
tactaat putative branch site (score: 1)
ttgtctct putative PPT
tatttatgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atcacacaccatttttccttatagatactgtaaatggctttgaaagtactaattgggtccatgtgactttttctttgctgtatttatgttgtctctgcagGATTCTTACTCTATCCAGAGTTTTGAGCGTGGTATTTCTGCACAAAATAATGGTGCCTTTGCATGGGAAATAATTCCG
-tcacaca
- - - - ccatttt
- - - - - - - - - - - - - - - - aatggct
- - - - - - - - - - - - - - - - - - - - -gaaagta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgtga