Sequence
atgc intronic sequence ATGC exonic sequence...gttgtcggtgaaactcctggcagacgttactttatctgaaatttgagttgtggcattgtaataagaatttcctcttatgtatattcttattttgttccagGTTTTAAACTTCATGTGGCTAAAGTTCTTTTTGATGTGGCGCTACTTTCGATTATGGTCACTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0507g00020.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA10G41940.2 (Glycine max), 3'ss of exon 11
-----------------------------------------------------------------------------gttgtcgg-tgaaactcc-tggcagacgttactttatc-tgaaatttgagttgtggcattgtaataagaatttcctcttat-gtatattcttattt---tgttccagGTTTTAAACTTCATGTGGCTAAAGTTCTTTTTGATGTGGCGCTACTTTCGATTATGGTCACTG
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gtaagagaatacatattcatcaattaagtggttttactgaaccctatgacgtcaactaatcatgtagccaaccacacctcgtgggataaggcttagtggttgttgttcttgtattatgaaaactaaattttcccaattatatcagcatgctgccttgtcattcttttctatttatttgtttcagGTATTAAACTTCATGTGGCTAAAATTTTTACTGATCTGGCGCTTTTTCCGTTTCTGGTCACTG
upper sequence: Vv00s0507g00020.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA20G25100.1 (Glycine max), 3'ss of exon 12
-----------------------------------------------------------------------------------gttgtcgg-tgaaactcc-tggcagacgttactt---tatc-tgaaatttgagttgtggcattgtaataagaatttcctcttat-gtatattcttatt---ttgttccagGTTTTAAACTTCATGTGGCTAAAGTTCTTTTTGATGTGGCGCTACTTTCGATTATGGTCACTG
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gtaagagaatacatatacatatacatcaattaagtggttttactgaacccattgacatcaactaatcatgtagccaacctcaccttgtgggataaggcttagtggttgttgttgtttttgtatcatgaaaactaaattttcccaattatatcagcatgctgccttgtcattcttttctatttatttgtttcagGTGTTAAACTTCATGTGGCTAAAATTTTTACTGATCTGGCGCTTTTTCCGCTTCTGGTCACTG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.agttgtggcattgtaataagaatttcctcttatgtatattcttattttgttccagGTTTTAAACTTCATGTGGCTAAAGTTCTTTTTGATGTGGCGCTACTTTCGATTATGGTCACTG
ttcttattttgttcc CT-rich tract
ttatgtatattcttat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttgtcggtgaaactcctggcagacgttactttatctgaaatttgagttgtggcattgtaataagaatttcctcttatgtatattcttattttgttccagGTTTTAAACTTCATGTGGCTAAAGTTCTTTTTGATGTGGCGCTACTTTCGATTATGGTCACTG
- - - - - - - - - ggcagac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ataagaa