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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacttctgggtcttaagtttctatattgtctacttagaattgccatgcaattagatctgattctgctttggttttgggcaaattttgaaaacacgaattattgtctcaagcttctaatgcaccaattattaaacagGATTGTAAGTCGCCGTTCCGTAAGGAATGGCATTTGGATAAAGCCCATGGTTTTAATTTCCTTCCTGGCACCCAGAG

Basic information

species Vitis vinifera
transcript Vv00s0400g00010.t01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0400g00010.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA16G06200.1 (Glycine max), 3'ss of exon 12
gtacttctgggtcttaagtttctatattgtctacttagaattgccatgcaattagatctgattctgctttggttttgggcaaattttgaaaacacgaattattgtctcaagcttctaatgcaccaattattaaacagGATTGTAAGTCGCCGTTCC---GTAAGGAATGGCATTTGGATAAAGCCCATGGTTTTAATTTCCTTCCTGGCACCCAGAG
                                     | ||   |    |||    | ||  | |||||||  |||         |   ||||| || || |  |        |  | |  |  | ||  | | ||||| || |||||   |||     |||||| |||| ||||||| ||||| ||||||||||||||| ||||||||||||||||
-------------------------------------gtatccactcttaatgttttatgggtgtgctttgacttt---------tctcaaacatgagttctctttatg----ttaattttaaaagttgctga-cagGACTGCAAGTCATTGTTGTCTAGTAAGGCATGGTATTTGGAAAAAGCTCATGGTTTTAATTTCTTTCCTGGCACCCAGAG

upper sequence: Vv00s0400g00010.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA19G25670.1 (Glycine max), 3'ss of exon 14
gtacttctgggtcttaagtttctatattgtctacttagaattgccatgcaattagatctgattctgctttggttttgggcaaattttgaaaacacgaattattgtctcaagcttctaatgcaccaattattaaacagGATTGTAAGTC---GCCGTTCCGTAAGGAATGGCATTTGGATAAAGCCCATGGTTTTAATTTCCTTCCTGGCACCCAGAG
                                             || || |   |     |||||  |  ||||||      |||   ||||  || || |  |        |  | |  |  | ||  | | ||||| || |||||   |  ||   |||||| |||| ||||||| ||||| ||||||||||||||| ||||||          
-------------------------------------------gtatccactcttaatgttttctgggtgtgttttgact---tttctgaaacttgagttctctttatg----ttaattttaaaagttgctga-cagGACTGCAAGTCATTGTTGTCTAGTAAGGCATGGTATTTGGAAAAAGCTCATGGTTTTAATTTCTTTCCTG----------


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attttgaaaacacgaattattgtctcaagcttctaatgcaccaattattaaacagGATTGTAAGTCGCCGTTCCGTAAGGAATGGCATTTGGATAAAGCCCATGGTTTTAATTTCCTTCCTGGCACCCAGAG
                              ttctaat  putative branch site (score: 2)
                                          aattattaaaca  TA-rich tract