Sequence
atgc intronic sequence ATGC exonic sequence...nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatagaacttcaactttcttttttttttgtccttcagATTTTCCAGTCTATCACACTGCTTTTGACTCCTATAACTGGATGACAAACCATGGGGATCCATTGTTTCAACGTCACGTGGCTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0352g00020.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA10G11100.1 (Glycine max), 3'ss of exon 6
---nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatagaacttcaactttcttttttttttgtccttcagATTTTCCAGTCTATCACACTGCTTTTGACTCCTATAACTGGATGACAAACCATGGGGATCCATTGTTTCAACGTCACGTGGCTG
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tcaaaatttttgcatctgaatattcttatatatgccaatgtccattatctgtcatatgtccatggccttcggtgttaaataatgtatttctttt---ctctagATTATCCTGTCTATCACACTGCTTTCGATTCCTATAACTGGATGACAAAGTTTGGAGATCCATTCTTTCAGCGCCATGAAGCTG
upper sequence: Vv00s0352g00020.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA03G36430.1 (Glycine max), 3'ss of exon 5
----nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatagaacttcaactttcttttttttttgtccttcagATTTTCCAGTCTATCACACTGCTTTTGACTCCTATAACTGGATGACAAACCATGGGGATCCATTGTTTCAACGTCACGTGGCTG
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aaattaaattatttctagctcaatatgccatgtctataatgtcatacatccataggcttgggtatctaatatgatgtaa----taatctctttcggatttccagATTTTCCCGTCTATCACACTGCGTTCGACTCCTATAACTGGATGGCAGAGTATGGAGATCCATTCTTCCACCGCCATGTTGCTG
upper sequence: Vv00s0352g00020.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA19G39080.1 (Glycine max), 3'ss of exon 5
---------------------------------------------------------------------------nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatagaacttcaactttcttttttttttgtccttcagATTTTCCAGTCTATCACACTGCTTTTGACTCCTATAACTGGATGACAAACCATGGGGATCCATTGTTTCAACGTCACGTGGCTG
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gtatgtatctcatgattcactgtccagtcccagattctttaggcatatattgttttgtaatacaaaaattaaattatttctagctcaatatgccatgtctataatatgtcatatatccatggacttggatttctaataattagtgatgtaataataatatctttcctatttccagATTTTCCCGTCTATCACACTGCATTCGACTCCTATAACTGGATGGCAGAGTATGGAGATCCATTCTTCCACCGCCATGTTGCTG
upper sequence: Vv00s0352g00020.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA12G23220.1 (Glycine max), 3'ss of exon 6
nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatagaacttcaactttcttttttttttgtccttcagATTTTCCAGTCTATCACACTGCTTTTGACTCCTATAACTGGATGACAAACCATGGGGATCCATTGTTTCAACGTCACGTGGCTG
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cctcaatatgcttctaatatgccatgtctataatgtgtcatatatccataggcttgaatttctaataatagtggtgtaataatctctttccgatttccagATTTCCCCATCTATCACACTGCGTTCGACTCCTATAACTGGATGGCATAGTATTGAGATCCATTCTTCCACCGCCATGTTACTG
upper sequence: Vv00s0352g00020.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: AT3G54720.1 (Arabidopsis thaliana), 3'ss of exon 5
--nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatagaacttcaactttcttttttttttgtccttcagATTTTCCAGTCTATCACACTGCTTTTGACTCCTATAACTGGATGACAAACCATGGGGATCCATTGTTTCAACGTCACGTGGCTG
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gtcaatgagaacatgattccttaagtcttgcaaaatattctataatgtgatgttttaatgcaagtaataccaataatgtatgttgtttatcctttctttcagATTATCCTGTCTATCACACTGCATTTGACTCCTATGATTGGATGATCCACAACGCAGATCCATTGTTTCACCGTCATGTTGCTA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.nnnnnnnnnnnnnnnnnnaatagaacttcaactttcttttttttttgtccttcagATTTTCCAGTCTATCACACTGCTTTTGACTCCTATAACTGGATGACAAACCATGGGGATCCATTGTTTCAACGTCACGTGGCTG
cttcaactttcttttt CT-rich tract
aactttcttttttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatagaacttcaactttcttttttttttgtccttcagATTTTCCAGTCTATCACACTGCTTTTGACTCCTATAACTGGATGACAAACCATGGGGATCCATTGTTTCAACGTCACGTGGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aatagaa