Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagttaacacaactttggtggtgaaggatccgtatttttgcctgtttagtagaaaaccataattcctttgccccctattattgttacagAAGCTTATGATAAAATGCAAGCTGACTTAATAACAGCAAAGGAAAGCCTAACCAAAATTTTGACTTCCAAGGATGTAAAAGCAACA

Basic information

species Vitis vinifera
transcript Vv00s0323g00040.t01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0323g00040.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA11G03320.1 (Glycine max), 3'ss of exon 5
gtcagttaacacaactttggtggtgaaggatcc-gtatttttgcctgtttagtagaaaaccataattcctttgccccctattattgttacagAAGCTTATGATAAAATGCAAGCTGACTTAATAACAGCAAAGGAAAGCCTAACCAAAATTTTGACTTCCAAGGATGTAAAAGCAACA
||  ||||| |  | || ||   | ||  |    || |       |    |  | | || |  |    | |||| ||    |  |  ||||||||| |||||||| ||||||| |||  |  ||| ||| | || ||||||||||||||| ||||| || |||||||  |||||||| 
gtttgttaataataattaggaaataaaaaaaaaagtgtaggaatttaccaaagatataagctca--caccttgctcctatcttctaatacagAAGCCTATGATAAGATGCAAGGTGAACTCGTAAAAGCCAGGGCAAGCCTAACCAAAATCTTGACATCAAAGGATGCCAAAGCAACT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351045677|gb|FQ440862.1|FQ440862
EST:     CAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTTGAAGGAACTG                         AAGCTTATGATAAAATGCAAGCTGACTTAATAACAGCAAAGGAAAGCCTAA
genomic: CAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTTGAAGGAACTGgtcagttaac ... attgttacagAAGCTTATGATAAAATGCAAGCTGACTTAATAACAGCAAAGGAAAGCCTAA
EST: gi|18458960|gb|BM437238.1|BM437238
EST:     CAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTTGAAGGAACTG                         AAGCTTATGATAAAATGCAAGCTGACTTAATAACAGCAAAGGAAAGCCTAA
genomic: CAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTTGAAGGAACTGgtcagttaac ... attgttacagAAGCTTATGATAAAATGCAAGCTGACTTAATAACAGCAAAGGAAAGCCTAA
EST: gi|28961923|gb|CB340981.1|CB340981
EST:     CAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTTGAAGGAACTG                         AAGCTTATGATAAAATGCAAGCTGACTTAATAACAGCAAAGGAAAGCCTAA
genomic: CAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTTGAAGGAACTGgtcagttaac ... attgttacagAAGCTTATGATAAAATGCAAGCTGACTTAATAACAGCAAAGGAAAGCCTAA
EST: gi|349812568|gb|FQ407187.1|FQ407187
EST:     CAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTTGAAGGAACTG                         AAGCTTATGATAAAATGCAAGCTGACTTAAAAACAGCAAAAGAAAGCCTAA
genomic: CAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTTGAAGGAACTGgtcagttaac ... attgttacagAAGCTTATGATAAAATGCAAGCTGACTTAATAACAGCAAAGGAAAGCCTAA
EST: gi|352782030|gb|FQ469328.1|FQ469328
EST:     CAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTTGAAGGAACTG                         AAGCTTATGATAAAATGCAAGCTGACTTAATAACAGCAAAGGAAAGCCTAA
genomic: CAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTTGAAGGAACTGgtcagttaac ... attgttacagAAGCTTATGATAAAATGCAAGCTGACTTAATAACAGCAAAGGAAAGCCTAA
EST: gi|351013034|gb|FQ433761.1|FQ433761
EST:     CAGATTGATAGAGCTGGAGGCACTGCAGAAGGCTCTGCTTGAAGGAACTG                         AAGCTTATGATAAAATGCAAGCTGACTTAATAACAGCAAAGGAAAGCCTAA
genomic: CAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTTGAAGGAACTGgtcagttaac ... attgttacagAAGCTTATGATAAAATGCAAGCTGACTTAATAACAGCAAAGGAAAGCCTAA
EST: gi|294966047|gb|GW837414.1|GW837414
EST:     CAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTTGAAGGAACTG                         AAGCTTATGATAAAATGCAAGCTGACTTAATAACAGCAAAGG
genomic: CAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTTGAAGGAACTGgtcagttaac ... attgttacagAAGCTTATGATAAAATGCAAGCTGACTTAATAACAGCAAAGG
EST: gi|351024091|gb|FQ423514.1|FQ423514
EST:     CAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTTGAAGGAACTG                         AAGCTTATGATAAAATGCAAGCTGACTTAATAACAGCAAAGGAAAGCCTAA
genomic: CAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTTGAAGGAACTGgtcagttaac ... attgttacagAAGCTTATGATAAAATGCAAGCTGACTTAATAACAGCAAAGGAAAGCCTAA
EST: gi|28964858|gb|CB343891.1|CB343891
EST:     CAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTTGAAGGAACTG                         AAGCTTATGATAAAATGCAAGCTGACTTAATAACAGCAAAGGAAAGCCTAA
genomic: CAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTTGAAGGAACTGgtcagttaac ... attgttacagAAGCTTATGATAAAATGCAAGCTGACTTAATAACAGCAAAGGAAAGCCTAA
EST: gi|110428331|gb|EC994800.1|EC994800
EST:     CAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTTGAAGGAACTG                         AAGCTTATGATAAAATGCAAGCTGACTTAATAACAGCAAAGGAAAGCCTAA
genomic: CAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTTGAAGGAACTGgtcagttaac ... attgttacagAAGCTTATGATAAAATGCAAGCTGACTTAATAACAGCAAAGGAAAGCCTAA
EST: gi|349825131|gb|FQ415678.1|FQ415678
EST:     CAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTTGAAGGAACTG                         AAGCTTATGATAAAATGCAAGCTGACTTAATAACAGCAAAGGAAAGCCTAA
genomic: CAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTTGAAGGAACTGgtcagttaac ... attgttacagAAGCTTATGATAAAATGCAAGCTGACTTAATAACAGCAAAGGAAAGCCTAA
EST: gi|28964910|gb|CB343943.1|CB343943
EST:     CAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTTGAAGGAACTG                         AAGCTTATGATAAAATGCAAGCTGACTTAATAACAGCAAAGGAAAGCCTAA
genomic: CAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTTGAAGGAACTGgtcagttaac ... attgttacagAAGCTTATGATAAAATGCAAGCTGACTTAATAACAGCAAAGGAAAGCCTAA
EST: gi|110372937|gb|EC937134.1|EC937134
EST:     CAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTTGAAGGAACTG                         AAGCTTATGATAAAATGCAAGCTGACTTAATAACAGCAAAGGAAAGCCTAA
genomic: CAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTTGAAGGAACTGgtcagttaac ... attgttacagAAGCTTATGATAAAATGCAAGCTGACTTAATAACAGCAAAGGAAAGCCTAA
EST: gi|351052007|gb|FQ450698.1|FQ450698
EST:     CAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTTGAAGGAACTG                         AAGCTTATGATAAAATGCAAGCTGACTTAATAACAGCAAAGGAAAGCCTAA
genomic: CAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTTGAAGGAACTGgtcagttaac ... attgttacagAAGCTTATGATAAAATGCAAGCTGACTTAATAACAGCAAAGGAAAGCCTAA
EST: gi|351023061|gb|FQ430936.1|FQ430936
EST:     CAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTTGAAGGAACTG                         AAGCTTATGATAAAATGCAAGCTGACTTAATAACAGCAAAGGAAAGCCTAA
genomic: CAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTTGAAGGAACTGgtcagttaac ... attgttacagAAGCTTATGATAAAATGCAAGCTGACTTAATAACAGCAAAGGAAAGCCTAA
EST: gi|351014068|gb|FQ434220.1|FQ434220
EST:     CAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTTGAAGGAACTG                         AAGCTTATGATAAAATGCAAGCTGACTTAATAACAGCAAAGGAAAGCCTAA
genomic: CAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTTGAAGGAACTGgtcagttaac ... attgttacagAAGCTTATGATAAAATGCAAGCTGACTTAATAACAGCAAAGGAAAGCCTAA
EST: gi|351034821|gb|FQ458178.1|FQ458178
EST:     CAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTTGAAGGAACTG                         AAGCTTATGATAAAAATGCAAGCTGACTTAATAACAGCAAAGGAAAGCCTA
genomic: CAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTTGAAGGAACTGgtcagttaac ... attgttacagAAGCTTATGATAAAA-TGCAAGCTGACTTAATAACAGCAAAGGAAAGCCTA
EST: gi|349810037|gb|FQ398662.1|FQ398662
EST:     CAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTTGAAGGAACTG                         AAGCTTATGATAAAATGCAAGCTGACTTAATAACAGCAAAGGAAAGCCTAA
genomic: CAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTTGAAGGAACTGgtcagttaac ... attgttacagAAGCTTATGATAAAATGCAAGCTGACTTAATAACAGCAAAGGAAAGCCTAA
EST: gi|349818743|gb|FQ409277.1|FQ409277
EST:     CAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTTGAAGGAACTG                         AAGCTTATGATAAAATGCAAGCTGACTTAATAACAGCAAAGGAAAGCCTAA
genomic: CAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTTGAAGGAACTGgtcagttaac ... attgttacagAAGCTTATGATAAAATGCAAGCTGACTTAATAACAGCAAAGGAAAGCCTAA
EST: gi|349833110|gb|FQ416488.1|FQ416488
EST:     CAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTTGAAGGAACTG                         AAGCTTATGATAAAATGCAAGCTGACTTAATAACAGCAAAGGAAAGCCTAA
genomic: CAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTTGAAGGAACTGgtcagttaac ... attgttacagAAGCTTATGATAAAATGCAAGCTGACTTAATAACAGCAAAGGAAAGCCTAA
EST: gi|26261480|gb|CA812543.1|CA812543
EST:     CAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTTGAAGGAACTG                         AAGCTTATGATAAAATGCAAGCTGACTTAATAACAGCAAAGGAAAGCCTAA
genomic: CAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTTGAAGGAACTGgtcagttaac ... attgttacagAAGCTTATGATAAAATGCAAGCTGACTTAATAACAGCAAAGGAAAGCCTAA
EST: gi|351035150|gb|FQ458507.1|FQ458507
EST:     CAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTTGAAGGAACTG                         AAGCTTATGATAAAAATGCAAGCTGACTTAATAACAGCAAAGGAAAGCCTA
genomic: CAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTTGAAGGAACTGgtcagttaac ... attgttacagAAGCTTATGATAAAA-TGCAAGCTGACTTAATAACAGCAAAGGAAAGCCTA
EST: gi|351044715|gb|FQ443246.1|FQ443246
EST:     CAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTTGAAGGAACTG                         AAGCTTATGATAAAATGCAAGCTGACTTAATAACAGCAAAGGAAGGCCTAA
genomic: CAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTTGAAGGAACTGgtcagttaac ... attgttacagAAGCTTATGATAAAATGCAAGCTGACTTAATAACAGCAAAGGAAAGCCTAA
EST: gi|110427789|gb|EC994240.1|EC994240
EST:     CAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTTGAAGGAACTG                         AAGCTTATGATAAAATGCAAGCTGACTTAATAACAGCAAAGGAAAGCCTAA
genomic: CAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTTGAAGGAACTGgtcagttaac ... attgttacagAAGCTTATGATAAAATGCAAGCTGACTTAATAACAGCAAAGGAAAGCCTAA
EST: gi|351024906|gb|FQ433323.1|FQ433323
EST:     CAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTTGAAGGAACTG                         AAGCTTATGATAAAATGCAAGCTGACTTAATAACAGCAAAGGAAAGCCTAA
genomic: CAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTTGAAGGAACTGgtcagttaac ... attgttacagAAGCTTATGATAAAATGCAAGCTGACTTAATAACAGCAAAGGAAAGCCTAA
EST: gi|351051811|gb|FQ455225.1|FQ455225
EST:     CAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTTGAAGGAACTG                         AAGCTTATGATAAAATGCAAGCTGACTTAATAACAGCAAAGGAAAGCCTAA
genomic: CAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTTGAAGGAACTGgtcagttaac ... attgttacagAAGCTTATGATAAAATGCAAGCTGACTTAATAACAGCAAAGGAAAGCCTAA
EST: gi|32248420|gb|CD714239.1|CD714239
EST:     CAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTTGAAGGAACTG                         AAGCTTATGATAAAATGCAAGCTGACTTAATAACAGCAAAGGAAAGCCTAA
genomic: CAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTTGAAGGAACTGgtcagttaac ... attgttacagAAGCTTATGATAAAATGCAAGCTGACTTAATAACAGCAAAGGAAAGCCTAA
EST: gi|32244984|gb|CD710803.1|CD710803
EST:     CAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTTGAAGGAACTG                         AAGCTTATGATAAAATGCAAGCTGACTTAATAACAGCAAAGGAAAGCCTAA
genomic: CAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTTGAAGGAACTGgtcagttaac ... attgttacagAAGCTTATGATAAAATGCAAGCTGACTTAATAACAGCAAAGGAAAGCCTAA
EST: gi|349832594|gb|FQ421952.1|FQ421952
EST:     CAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTTGAAGGAACTG                         AAGCTTATGATAAAATGCAAGCTGACTTAATAACAGCAAAGGAAAGCCTAA
genomic: CAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTTGAAGGAACTGgtcagttaac ... attgttacagAAGCTTATGATAAAATGCAAGCTGACTTAATAACAGCAAAGGAAAGCCTAA
EST: gi|351043470|gb|FQ428942.1|FQ428942
EST:     CAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTTGAAGGAACTG                         AAGCTTATGATAAAATGCAAGCTGACTTAATAACAGCAAAGGAAAGCCTAA
genomic: CAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTTGAAGGAACTGgtcagttaac ... attgttacagAAGCTTATGATAAAATGCAAGCTGACTTAATAACAGCAAAGGAAAGCCTAA
EST: gi|349823321|gb|FQ402520.1|FQ402520
EST:     CAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTTGAAGGAACTG                         AAGCTTATGATAAAAATGCAAGCTGACTTAATAACAGCAAAGGAAAGCCTA
genomic: CAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTTGAAGGAACTGgtcagttaac ... attgttacagAAGCTTATGATAAAA-TGCAAGCTGACTTAATAACAGCAAAGGAAAGCCTA
EST: gi|351014302|gb|FQ437304.1|FQ437304
EST:     CAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTTGAAGGAACTG                         AAGCTTATGATAAAATGCAAGCTGACTTAATAACAGCAAAGGAAAGCCTAA
genomic: CAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTTGAAGGAACTGgtcagttaac ... attgttacagAAGCTTATGATAAAATGCAAGCTGACTTAATAACAGCAAAGGAAAGCCTAA
EST: gi|352769266|gb|FQ471415.1|FQ471415
EST:     CAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTTGAAGGAACTG                         AAGCTTATGATAAAATGCAAGCTGACTTAATAACAGCAAAGGAAAGCCTAA
genomic: CAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTTGAAGGAACTGgtcagttaac ... attgttacagAAGCTTATGATAAAATGCAAGCTGACTTAATAACAGCAAAGGAAAGCCTAA
EST: gi|110699852|gb|EE077230.1|EE077230
EST:     CAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTTGAAGGAACTG                         AAGCTTATGATAAAATGCAAGCTGACTTAATAACAGCAAAGGAAAGCCTAA
genomic: CAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTTGAAGGAACTGgtcagttaac ... attgttacagAAGCTTATGATAAAATGCAAGCTGACTTAATAACAGCAAAGGAAAGCCTAA
EST: gi|351013822|gb|FQ433974.1|FQ433974
EST:     CAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTTGAAGGAACTG                         AAGCTTATGATAAAATGCAAGCTGACTTAATAACAGCAAAGGAAAGCCTAA
genomic: CAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTTGAAGGAACTGgtcagttaac ... attgttacagAAGCTTATGATAAAATGCAAGCTGACTTAATAACAGCAAAGGAAAGCCTAA
EST: gi|351017299|gb|FQ435651.1|FQ435651
EST:     CAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTTGAAGGAACTG                         AAGCTTATGATAAAATGCAAGCTGACTTAATAACAGCAAAGGAAAGCCTAA
genomic: CAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTTGAAGGAACTGgtcagttaac ... attgttacagAAGCTTATGATAAAATGCAAGCTGACTTAATAACAGCAAAGGAAAGCCTAA
EST: gi|351044247|gb|FQ447601.1|FQ447601
EST:     CAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTTGAAGGAACTG                         AAGCTTATGATAAAATGCAAGCTGACTTAATAACAGCAAAGGAAAGCCTAA
genomic: CAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTTGAAGGAACTGgtcagttaac ... attgttacagAAGCTTATGATAAAATGCAAGCTGACTTAATAACAGCAAAGGAAAGCCTAA
EST: gi|110684606|gb|EE062073.1|EE062073
EST:     CAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTTGAAGGAACTG                         AAGCTTATGATAAAATGCAAGCTGACTTAATAACAGCAAAGGAAAGCCTAA
genomic: CAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTTGAAGGAACTGgtcagttaac ... attgttacagAAGCTTATGATAAAATGCAAGCTGACTTAATAACAGCAAAGGAAAGCCTAA
EST: gi|351025451|gb|FQ435143.1|FQ435143
EST:     CAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTTGAAGGAACTG                         AAGCTTATGATAAAATGCAAGCTGACTTAATAACAGCAAAGGAAAGCCTAA
genomic: CAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTTGAAGGAACTGgtcagttaac ... attgttacagAAGCTTATGATAAAATGCAAGCTGACTTAATAACAGCAAAGGAAAGCCTAA
EST: gi|351040609|gb|FQ438153.1|FQ438153
EST:     CAGATTGATAGAGCTGGAAGCGCTGCAGAAGGCTCTGCTTGAAGGAACTG                         AAGCTTAAGATAGAATGCGAGCTGACTTAATAACAGCAAACGAAAGCCAAA
genomic: CAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTTGAAGGAACTGgtcagttaac ... attgttacagAAGCTTATGATAAAATGCAAGCTGACTTAATAACAGCAAAGGAAAGCCTAA
EST: gi|351045771|gb|FQ440956.1|FQ440956
EST:     CAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTTGAAGGAACTG                         AAGCTTATGATAAAATGCAAGCTGACTTAATAACAGCAAAGGAAAGCCTAA
genomic: CAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTTGAAGGAACTGgtcagttaac ... attgttacagAAGCTTATGATAAAATGCAAGCTGACTTAATAACAGCAAAGGAAAGCCTAA
EST: gi|349825132|gb|FQ415679.1|FQ415679
EST:     CAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTTGAAGGAACTG                         AAGCTTATGATAAAATGCAAGCTGACTTAATAACAGCAAAGGAAAGCCTAA
genomic: CAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTTGAAGGAACTGgtcagttaac ... attgttacagAAGCTTATGATAAAATGCAAGCTGACTTAATAACAGCAAAGGAAAGCCTAA
EST: gi|51050325|gb|CO818492.1|CO818492
EST:     CAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTTGAAGGAACTG                         AAGCTTATGATAAAATGCAAGCTGACTTAATAACAGCAAAGGAAAGCCTAA
genomic: CAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTTGAAGGAACTGgtcagttaac ... attgttacagAAGCTTATGATAAAATGCAAGCTGACTTAATAACAGCAAAGGAAAGCCTAA
EST: gi|349830964|gb|FQ418248.1|FQ418248
EST:     CAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTTGAAGGAACTG                         AAGCTTATGATAAAATGCAAGCTGACTTAATAACAGCAAAGGAAAGCCTAA
genomic: CAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTTGAAGGAACTGgtcagttaac ... attgttacagAAGCTTATGATAAAATGCAAGCTGACTTAATAACAGCAAAGGAAAGCCTAA
EST: gi|18459240|gb|BM437518.1|BM437518
EST:     CAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTTGAAGGAACTG                         AAGCTTATGATAAAATGCAAGCTGACTTAATAACAGCAAAGGAAAGCCTAA
genomic: CAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTTGAAGGAACTGgtcagttaac ... attgttacagAAGCTTATGATAAAATGCAAGCTGACTTAATAACAGCAAAGGAAAGCCTAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttgcctgtttagtagaaaaccataattcctttgccccctattattgttacagAAGCTTATGATAAAATGCAAGCTGACTTAATAACAGCAAAGGAAAGCCTAACCAAAATTTTGACTTCCAAGGATGTAAAAGCAACA
                                         tattattgtta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtcagttaacacaactttggtggtgaaggatccgtatttttgcctgtttagtagaaaaccataattcctttgccccctattattgttacagAAGCTTATGATAAAATGCAAGCTGACTTAATAACAGCAAAGGAAAGCCTAACCAAAATTTTGACTTCCAAGGATGTAAAAGCAACA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCAA